Non-Coding RNA Search

Ss1.1-rnep27c_c17.5

Sequence:


               
               ACTCCCCCAAGTTGGGGAAGGGAGGGGGAAACCCATGAGGAAAACAGCTCAGGTTTTATC
GCCGACCGGGAATAGACGACCTCAATGCTGAACTGCACTGGAGAAAGGGGCAAGGTACTC
CCACTGAGGGGTACGAGCTGCCATCTCAGGCTGCCTTGAGGACCTGGGCTCCCTCTGCTA
CTCCCAGGAAATGGGCTCCTGACACAGCGGTCTGCTACCACAGCCCAGGAGGGTGTCAAC
ACCAGCAAATGCTGTATCTGCAGCATGCCCAAGATGACCCTTCTCCCTCACCTCTACCCA
GCCACTGGCAGGGAGGGGAGACAGGGGTGACAGCAGCAGCACTCTAGGCATGGTGAACGC
CTGGGACCAAGCCATGAGGCGTTTTCTTATTTTGCCTTCCTGGAAGACTCAAGATGTGTC
TCTTCATTCTCTCTCTCAGTATTTGTTTACTTTGGTGTTTGTTTTTTTTTTTTTTTAATC
TCAGAGAGAGGTGTGTTTAGTGGACACAAGCTGTAATATTCAGCAAAACTTTGTCAGTTG
GCACTGTTTACAAGTCTGTTAGCTGCATAAGCTCAATAAAAAGTTGGTCTGGGCATTACA
TCCCCTCTAGCAGGCCAATAGCTGCATGAGCTGTTGGGAGGAATGGGAGGCAGGGGAAGG
ACATAAAGCCAAAGGACAGCAGGAACCCATCGCCTAGTTCCCTTCCCTTTCCCATCTTCT
ACCCCCTGTTCTGGACGCCATAAGGACCTTAATTCTGGCTTTAGCTGCTAGTGTTTTCCT
TCTTCACTTCCCTCCTATTAAAATAGATGTCTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCCCCAAGTTGGGGAAGGGAGGGGGAAACCCATGAGGAAAACAGCTCAGGTTTTATC
GCCGACCGGGAATAGACGACCTCAATGCTGAACTGCACTGGAGAAAGGGGCAAGGTACTC
CCACTGAGGGGTACGAGCTGCCATCTCAGGCTGCCTTGAGGACCTGGGCTCCCTCTGCTA
CTCCCAGGAAATGGGCTCCTGACACAGCGGTCTGCTACCACAGCCCAGGAGGGTGTCAAC
ACCAGCAAATGCTGTATCTGCAGCATGCCCAAGATGACCCTTCTCCCTCACCTCTACCCA
GCCACTGGCAGGGAGGGGAGACAGGGGTGACAGCAGCAGCACTCTAGGCATGGTGAACGC
CTGGGACCAAGCCATGAGGCGTTTTCTTATTTTGCCTTCCTGGAAGACTCAAGATGTGTC
TCTTCATTCTCTCTCTCAGTATTTGTTTACTTTGGTGTTTGTTTTTTTTTTTTTTTAATC
TCAGAGAGAGGTGTGTTTAGTGGACACAAGCTGTAATATTCAGCAAAACTTTGTCAGTTG
GCACTGTTTACAAGTCTGTTAGCTGCATAAGCTCAATAAAAAGTTGGTCTGGGCATTACA
TCCCCTCTAGCAGGCCAATAGCTGCATGAGCTGTTGGGAGGAATGGGAGGCAGGGGAAGG
ACATAAAGCCAAAGGACAGCAGGAACCCATCGCCTAGTTCCCTTCCCTTTCCCATCTTCT
ACCCCCTGTTCTGGACGCCATAAGGACCTTAATTCTGGCTTTAGCTGCTAGTGTTTTCCT
TCTTCACTTCCCTCCTATTAAAATAGATGTCTTAAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               162-358, - strand, RNAz p=0.92565
               

               
               428-584, - strand, RNAz p=0.571641
               

               
               620-735, + strand, RNAz p=0.554535

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-358, - strand, RNAz p=0.92565
               

               
               428-584, - strand, RNAz p=0.571641
               

               
               620-735, + strand, RNAz p=0.554535

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               605-702, + strand, RNAmicro p=0.902801

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               605-702, + strand, RNAmicro p=0.902801

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-779, gnl|bosTau2|chr2 (59523357-59522588)
               

               
               4-779, gnl|Hg17|chr2 (219284530-219285300)
               

               
               4-779, gnl|Mm7|chr1 (74768550-74769309)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-779, gnl|bosTau2|chr2 (59523357-59522588)
               

               
               4-779, gnl|Hg17|chr2 (219284530-219285300)
               

               
               4-779, gnl|Mm7|chr1 (74768550-74769309)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	162-358, - strand, RNAz p=0.92565
	428-584, - strand, RNAz p=0.571641
	620-735, + strand, RNAz p=0.554535

	4-779, gnl\|bosTau2\|chr2 (59523357-59522588)
	4-779, gnl\|Hg17\|chr2 (219284530-219285300)
	4-779, gnl\|Mm7\|chr1 (74768550-74769309)