Non-Coding RNA Search

Ss1.1-rnep27c_g7.5

Sequence:


               
               TGGCTAACAGCCTCCTGGCCGCCGCCGCCGCCGCCACCACCACCGCCCCCAACCGCGCGC
ATCCCGAGCCGCCCCGGGAAGCAGGAGCCACCATGCACGTGAAGAAGTACTTGCTGAAGT
GCCTGCACCGGCTGCAGAAGGGCCCGGGTTACACCTACAAGGAGCTGCTGGTGTGGTACT
GTGACAACACCAACACCCACGGCCCCAAGCGCATCATCCGCGAGGGGCCCAAGAAGAAGG
CCATGTGGTTTGTGCTCACGCTGCTCTTCACCTCCCTCGTCTGCTGGCAGTGGGGCGTCT
TCATCAGGACCTACCTGAGCTGGGAGGTCAGCGTCTCCCTCTCCATGGGCTCCAAGACCA
TGGACTTCCCTGCCGTCACCATCTGCAATGCCAGCCCCTTCCAGTATTCCAAAGTCCAGC
ATCTGCTGAAGGACCTGGATGAGCTGATGGAGGCAGTCCTGCAGAGGATCCTGGCTCCCG
AGCTCAGCCATGTCAATGCCACCGAGACCCTGAACTTCACCATCTGGAACCACACGCCCT
TGGTCTTCATTAATGAGCAGAATCCCCAACACCCAGTGGTTCTTGACCTCTTTGAAGACA
ACTACAATGGCTCAGCAAGCAGCGGCCCGGCACCCGAAAGGACCTGCAGGGCCCCGGGAT
GCAAAATAGCCATGAAACTATGCAGCCACAACGGGACCACGTGCACCTTCCGGAGCTTTA
GCAGCGCCACCCGGGCCGTGACGGAGTGGTACACCCTGCAGGCCACCAACATCTTCTCGC
AGGTTCCAAACAAGGAGCTGGTGGCCATGGGTTACCCCGCCGAGAGGATGATCCTGGCTT
GTCTGTTCGGGGCGGAGCCCTGCAACTACAGGAACTTCACCCCCATCTTCCACCCGGATT
ATGGCAACTGTTACATCTTCAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTAACAGCCTCCTGGCCGCCGCCGCCGCCGCCACCACCACCGCCCCCAACCGCGCGC
ATCCCGAGCCGCCCCGGGAAGCAGGAGCCACCATGCACGTGAAGAAGTACTTGCTGAAGT
GCCTGCACCGGCTGCAGAAGGGCCCGGGTTACACCTACAAGGAGCTGCTGGTGTGGTACT
GTGACAACACCAACACCCACGGCCCCAAGCGCATCATCCGCGAGGGGCCCAAGAAGAAGG
CCATGTGGTTTGTGCTCACGCTGCTCTTCACCTCCCTCGTCTGCTGGCAGTGGGGCGTCT
TCATCAGGACCTACCTGAGCTGGGAGGTCAGCGTCTCCCTCTCCATGGGCTCCAAGACCA
TGGACTTCCCTGCCGTCACCATCTGCAATGCCAGCCCCTTCCAGTATTCCAAAGTCCAGC
ATCTGCTGAAGGACCTGGATGAGCTGATGGAGGCAGTCCTGCAGAGGATCCTGGCTCCCG
AGCTCAGCCATGTCAATGCCACCGAGACCCTGAACTTCACCATCTGGAACCACACGCCCT
TGGTCTTCATTAATGAGCAGAATCCCCAACACCCAGTGGTTCTTGACCTCTTTGAAGACA
ACTACAATGGCTCAGCAAGCAGCGGCCCGGCACCCGAAAGGACCTGCAGGGCCCCGGGAT
GCAAAATAGCCATGAAACTATGCAGCCACAACGGGACCACGTGCACCTTCCGGAGCTTTA
GCAGCGCCACCCGGGCCGTGACGGAGTGGTACACCCTGCAGGCCACCAACATCTTCTCGC
AGGTTCCAAACAAGGAGCTGGTGGCCATGGGTTACCCCGCCGAGAGGATGATCCTGGCTT
GTCTGTTCGGGGCGGAGCCCTGCAACTACAGGAACTTCACCCCCATCTTCCACCCGGATT
ATGGCAACTGTTACATCTTCAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3152936|gb|AAC17180.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3152936|gb|AAC17180.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               280-406, - strand, RNAz p=0.712066

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-406, - strand, RNAz p=0.712066

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               81-406, gnl|bosTau2|chr25 (19535029-19535354)
               

               
               81-406, gnl|Hg17|chr16 (23267410-23267735)
               

               
               81-406, gnl|Mm7|chr7 (117823492-117823817)
               


               
               681-872, gnl|bosTau2|chr25 (19539597-19539788)
               

               
               681-872, gnl|canFam2|chr6 (25481169-25480950)
               

               
               681-872, gnl|dasNov1|scaffold_17563 (12326-12544)
               

               
               681-872, gnl|echTel1|scaffold_166388 (1115-900)
               

               
               681-872, gnl|galGal2|chr14 (8993634-8993429)
               

               
               681-872, gnl|hg17|chr16 (23274101-23274320)
               

               
               681-872, gnl|Hg17|chr16 (23274121-23274312)
               

               
               681-872, gnl|loxAfr1|scaffold_30337 (3292-3073)
               

               
               681-872, gnl|mm7|chr7 (117826948-117827164)
               

               
               681-872, gnl|Mm7|chr7 (117826965-117827156)
               

               
               681-872, gnl|monDom2|scaffold_17 (43731056-43730849)
               

               
               681-872, gnl|oryCun1|scaffold_176183 (46396-46177)
               

               
               681-872, gnl|panTro1|chr18 (23888625-23888844)
               

               
               681-872, gnl|rheMac2|chr20 (21848667-21848886)
               

               
               681-872, gnl|rn3|chr1 (180861685-180861902)
               

               
               681-872, gnl|xenTro1|scaffold_6 (5194152-5194365)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-406, gnl|bosTau2|chr25 (19535029-19535354)
               

               
               81-406, gnl|Hg17|chr16 (23267410-23267735)
               

               
               81-406, gnl|Mm7|chr7 (117823492-117823817)
               


               
               681-872, gnl|bosTau2|chr25 (19539597-19539788)
               

               
               681-872, gnl|canFam2|chr6 (25481169-25480950)
               

               
               681-872, gnl|dasNov1|scaffold_17563 (12326-12544)
               

               
               681-872, gnl|echTel1|scaffold_166388 (1115-900)
               

               
               681-872, gnl|galGal2|chr14 (8993634-8993429)
               

               
               681-872, gnl|hg17|chr16 (23274101-23274320)
               

               
               681-872, gnl|Hg17|chr16 (23274121-23274312)
               

               
               681-872, gnl|loxAfr1|scaffold_30337 (3292-3073)
               

               
               681-872, gnl|mm7|chr7 (117826948-117827164)
               

               
               681-872, gnl|Mm7|chr7 (117826965-117827156)
               

               
               681-872, gnl|monDom2|scaffold_17 (43731056-43730849)
               

               
               681-872, gnl|oryCun1|scaffold_176183 (46396-46177)
               

               
               681-872, gnl|panTro1|chr18 (23888625-23888844)
               

               
               681-872, gnl|rheMac2|chr20 (21848667-21848886)
               

               
               681-872, gnl|rn3|chr1 (180861685-180861902)
               

               
               681-872, gnl|xenTro1|scaffold_6 (5194152-5194365)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	81-406, gnl\|bosTau2\|chr25 (19535029-19535354)
	81-406, gnl\|Hg17\|chr16 (23267410-23267735)
	81-406, gnl\|Mm7\|chr7 (117823492-117823817)

	681-872, gnl\|bosTau2\|chr25 (19539597-19539788)
	681-872, gnl\|canFam2\|chr6 (25481169-25480950)
	681-872, gnl\|dasNov1\|scaffold_17563 (12326-12544)
	681-872, gnl\|echTel1\|scaffold_166388 (1115-900)
	681-872, gnl\|galGal2\|chr14 (8993634-8993429)
	681-872, gnl\|hg17\|chr16 (23274101-23274320)
	681-872, gnl\|Hg17\|chr16 (23274121-23274312)
	681-872, gnl\|loxAfr1\|scaffold_30337 (3292-3073)
	681-872, gnl\|mm7\|chr7 (117826948-117827164)
	681-872, gnl\|Mm7\|chr7 (117826965-117827156)
	681-872, gnl\|monDom2\|scaffold_17 (43731056-43730849)
	681-872, gnl\|oryCun1\|scaffold_176183 (46396-46177)
	681-872, gnl\|panTro1\|chr18 (23888625-23888844)
	681-872, gnl\|rheMac2\|chr20 (21848667-21848886)
	681-872, gnl\|rn3\|chr1 (180861685-180861902)
	681-872, gnl\|xenTro1\|scaffold_6 (5194152-5194365)