Non-Coding RNA Search

Ss1.1-rnep27c_i5.5

Sequence:


               
               AGGACTTGGCTGTCTCCTGCATTTGTATATCACTACAGACACAGTGTTGTGTGTGCGCGT
GTGTATATGTGCACCAGCATCAAACATTGTGTATCTGGAAGGGAAGAAGCATGTTCCAGT
CCTAAGTCGCAGTTTCCAGACTCATCGCTTTCAGTCCTTGAAGATAGAAGCTAGCGGATT
TTCTGTAGTGCAGAATATGTTTATGCCCTTTTTGTATTTGAATAATATACTGTTCAATGC
CTCTTTTCTGCAAAGTGTATCATCTCATTGACTGTGAATCTGTATATTACTCTAATGGAT
ACAGATAATGGTCTTTTCTCTTGTGAGGTACCTTCATGTAATGCACTGTCCAAAAACAGC
CATGTGTACGAGTCTTTCTCTGTATCACGAACTGCATGGAAAAAGACTCCTGTGGACATA
ATTCTGACTTAAACCCATGAAGTTACTTCAGTTTGAGAAGCCTGTCTTATGGAAATCACC
AAATACTTTACTACTCGATTTCATCTGACATGGAACTGAATATCAAATCCAGGAACCTTC
CATGAGAAAATGAAAAGAGAAGAGTACACTGAAGCAAAGAGAAATGGGACACTTGGCATT
TCAAACTGCGGACTGACTTGGTTTGCCGGGCAGGGAGATAACAGACTTGGTGCTAAGTCA
TTTGGAAACCATCTGCTCTGATGGACAGGCCTGGATGGTGTAGCCCGAGATATTGACCTG
GGAGAGCGGGCGTCTTTTGGTGAAGGAGGGGGGACTGTTTGGTGGCAGTGTGTGATCAGG
CCTCTGCTGAGGTTCCCGTGTGCCATGGGGCTTAGCTAGGGGGTGATGGGCCCGGCTCAG
AGTGCTCGCTCTGCCCCATCTCTGGCTTGGCTGCCCAGTGACTTCTGCCCCGTGATTCCC
CTTTCCTGGTGGAATCCTCTCCCCACTAATTCAGTGAAGAAAGAGAGCAGAGAAGCTCCT
TGGACTCCAGAAGGAGAAGGTAGAAAATTCCAGGCAGCGCTCTGGTTGAGGATGTAAGAC
CGGTTTATTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACTTGGCTGTCTCCTGCATTTGTATATCACTACAGACACAGTGTTGTGTGTGCGCGT
GTGTATATGTGCACCAGCATCAAACATTGTGTATCTGGAAGGGAAGAAGCATGTTCCAGT
CCTAAGTCGCAGTTTCCAGACTCATCGCTTTCAGTCCTTGAAGATAGAAGCTAGCGGATT
TTCTGTAGTGCAGAATATGTTTATGCCCTTTTTGTATTTGAATAATATACTGTTCAATGC
CTCTTTTCTGCAAAGTGTATCATCTCATTGACTGTGAATCTGTATATTACTCTAATGGAT
ACAGATAATGGTCTTTTCTCTTGTGAGGTACCTTCATGTAATGCACTGTCCAAAAACAGC
CATGTGTACGAGTCTTTCTCTGTATCACGAACTGCATGGAAAAAGACTCCTGTGGACATA
ATTCTGACTTAAACCCATGAAGTTACTTCAGTTTGAGAAGCCTGTCTTATGGAAATCACC
AAATACTTTACTACTCGATTTCATCTGACATGGAACTGAATATCAAATCCAGGAACCTTC
CATGAGAAAATGAAAAGAGAAGAGTACACTGAAGCAAAGAGAAATGGGACACTTGGCATT
TCAAACTGCGGACTGACTTGGTTTGCCGGGCAGGGAGATAACAGACTTGGTGCTAAGTCA
TTTGGAAACCATCTGCTCTGATGGACAGGCCTGGATGGTGTAGCCCGAGATATTGACCTG
GGAGAGCGGGCGTCTTTTGGTGAAGGAGGGGGGACTGTTTGGTGGCAGTGTGTGATCAGG
CCTCTGCTGAGGTTCCCGTGTGCCATGGGGCTTAGCTAGGGGGTGATGGGCCCGGCTCAG
AGTGCTCGCTCTGCCCCATCTCTGGCTTGGCTGCCCAGTGACTTCTGCCCCGTGATTCCC
CTTTCCTGGTGGAATCCTCTCCCCACTAATTCAGTGAAGAAAGAGAGCAGAGAAGCTCCT
TGGACTCCAGAAGGAGAAGGTAGAAAATTCCAGGCAGCGCTCTGGTTGAGGATGTAAGAC
CGGTTTATTATA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-96, - strand, RNAz p=0.998083
               

               
               866-1028, - strand, RNAz p=0.98123
               

               
               907-1008, - strand, RNAz p=0.873811

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-96, - strand, RNAz p=0.998083
               

               
               866-1028, - strand, RNAz p=0.98123
               

               
               907-1008, - strand, RNAz p=0.873811

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               32-118, + strand, RNAmicro p=0.999963

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               32-118, + strand, RNAmicro p=0.999963

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-1028, gnl|bosTau2|chr11 (35457289-35458335)
               

               
               1-1028, gnl|canFam2|chr17 (41477488-41476786)
               

               
               1-1028, gnl|dasNov1|scaffold_24155 (16315-17048)
               

               
               1-1028, gnl|echTel1|scaffold_310473 (40972-40240)
               

               
               1-1028, gnl|galGal2|chr4 (85749447-85750214)
               

               
               1-1028, gnl|hg17|chr2 (86912980-86913620)
               

               
               1-1028, gnl|Hg17|chr2 (86913033-86914061)
               

               
               1-1028, gnl|loxAfr1|scaffold_6166 (61370-62152)
               

               
               1-1028, gnl|mm7|chr6 (71410299-71409621)
               

               
               1-1028, gnl|Mm7|chr6 (71410229-71409222)
               

               
               1-1028, gnl|oryCun1|scaffold_172507 (12460-13152)
               

               
               1-1028, gnl|panTro1|chr12 (89791648-89792284)
               

               
               1-1028, gnl|rheMac2|chr13 (88386260-88386906)
               

               
               1-1028, gnl|rn3|chr4 (104848194-104847506)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1028, gnl|bosTau2|chr11 (35457289-35458335)
               

               
               1-1028, gnl|canFam2|chr17 (41477488-41476786)
               

               
               1-1028, gnl|dasNov1|scaffold_24155 (16315-17048)
               

               
               1-1028, gnl|echTel1|scaffold_310473 (40972-40240)
               

               
               1-1028, gnl|galGal2|chr4 (85749447-85750214)
               

               
               1-1028, gnl|hg17|chr2 (86912980-86913620)
               

               
               1-1028, gnl|Hg17|chr2 (86913033-86914061)
               

               
               1-1028, gnl|loxAfr1|scaffold_6166 (61370-62152)
               

               
               1-1028, gnl|mm7|chr6 (71410299-71409621)
               

               
               1-1028, gnl|Mm7|chr6 (71410229-71409222)
               

               
               1-1028, gnl|oryCun1|scaffold_172507 (12460-13152)
               

               
               1-1028, gnl|panTro1|chr12 (89791648-89792284)
               

               
               1-1028, gnl|rheMac2|chr13 (88386260-88386906)
               

               
               1-1028, gnl|rn3|chr4 (104848194-104847506)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               eep (0.122564)

	1-96, - strand, RNAz p=0.998083
	866-1028, - strand, RNAz p=0.98123
	907-1008, - strand, RNAz p=0.873811

	1-1028, gnl\|bosTau2\|chr11 (35457289-35458335)
	1-1028, gnl\|canFam2\|chr17 (41477488-41476786)
	1-1028, gnl\|dasNov1\|scaffold_24155 (16315-17048)
	1-1028, gnl\|echTel1\|scaffold_310473 (40972-40240)
	1-1028, gnl\|galGal2\|chr4 (85749447-85750214)
	1-1028, gnl\|hg17\|chr2 (86912980-86913620)
	1-1028, gnl\|Hg17\|chr2 (86913033-86914061)
	1-1028, gnl\|loxAfr1\|scaffold_6166 (61370-62152)
	1-1028, gnl\|mm7\|chr6 (71410299-71409621)
	1-1028, gnl\|Mm7\|chr6 (71410229-71409222)
	1-1028, gnl\|oryCun1\|scaffold_172507 (12460-13152)
	1-1028, gnl\|panTro1\|chr12 (89791648-89792284)
	1-1028, gnl\|rheMac2\|chr13 (88386260-88386906)
	1-1028, gnl\|rn3\|chr4 (104848194-104847506)