Non-Coding RNA Search

Ss1.1-rnep27c_m17.5

Sequence:


               
               AACAGTAAACCTGGAAGAAACCTAAGAAAACTATCCCAAGGATGCATTTAGATTACTCAG
GACAAGGGGTGATCATTTTCGCAAGGATAACACAATGACTGTAGGTCGAGGAGACCAAAG
ACTTGCTGGTAGCACAGAGGTCAACAGCAACTAAAGACAAAGAAAGTCAGGCTCGGGTTG
CTTGAATGTTACCACGCCATCTCACAGAGCCTTGTAATCAGGCATATGACTAATAGAAAG
ATGGTGGCGACATGCTGGAGCCTAGTAAAGCCTAGGGATGAAGCTTGCGGCTGGAGCAGT
CACAGGTTAGTTGTCTAAAGGTTGTTCTCTGTCCCCTGATTCCATGGTGGGAGGATCAGC
AGCAGGAGGGCTGGCAGCAGGTGGACACACAGCGAGGGCGGCAGCAGGGGGTCTGACAGC
AGACAGGGCGGCAGCAAGGCTGGCAGCAGCTGGACTCACAGCTCTGGGCTAGGCAGCCCG
GCAGGCAGAAGCACGTGGGGTGGTAGCAGGTTCTGCGGCAGTACACAGCGGCACTGCAAG
CCGGCTGGTAGCGGGGCTGGCAGCAGGGCTGGCAGCAGCTGGACCCACTGCAGGTTTGTC
CACAGCTGCTGGACTCACAGCACGTGGGCTGGCAGCAGGTGGTCACACAAGTCGGTTTGC
AGCAAGTGGTCCTGCAGCAGGTGGTTGGACAGCGAAGGGGCTGGCAGCAGGGCTGGCAGC
AGCTGGACTCACAGCAGGTGGGCTGGCAGCAGGTGGTCACACAAGTCGGTTTGCGGCAGG
TGGTCCTACAGCAAGTCGTTTGGGTGGCCTCATAGCAAACTGGGGGGCAGCAAGGCCGGC
AGCAGCTGGACTCACAGCACGTGGGCTGGCAGCAAGGAGAGCAGCAAGAGTGGGTCATGG
TAGCAGTGGTGGAGGGCGAGCCTCTGTTTAGTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGTAAACCTGGAAGAAACCTAAGAAAACTATCCCAAGGATGCATTTAGATTACTCAG
GACAAGGGGTGATCATTTTCGCAAGGATAACACAATGACTGTAGGTCGAGGAGACCAAAG
ACTTGCTGGTAGCACAGAGGTCAACAGCAACTAAAGACAAAGAAAGTCAGGCTCGGGTTG
CTTGAATGTTACCACGCCATCTCACAGAGCCTTGTAATCAGGCATATGACTAATAGAAAG
ATGGTGGCGACATGCTGGAGCCTAGTAAAGCCTAGGGATGAAGCTTGCGGCTGGAGCAGT
CACAGGTTAGTTGTCTAAAGGTTGTTCTCTGTCCCCTGATTCCATGGTGGGAGGATCAGC
AGCAGGAGGGCTGGCAGCAGGTGGACACACAGCGAGGGCGGCAGCAGGGGGTCTGACAGC
AGACAGGGCGGCAGCAAGGCTGGCAGCAGCTGGACTCACAGCTCTGGGCTAGGCAGCCCG
GCAGGCAGAAGCACGTGGGGTGGTAGCAGGTTCTGCGGCAGTACACAGCGGCACTGCAAG
CCGGCTGGTAGCGGGGCTGGCAGCAGGGCTGGCAGCAGCTGGACCCACTGCAGGTTTGTC
CACAGCTGCTGGACTCACAGCACGTGGGCTGGCAGCAGGTGGTCACACAAGTCGGTTTGC
AGCAAGTGGTCCTGCAGCAGGTGGTTGGACAGCGAAGGGGCTGGCAGCAGGGCTGGCAGC
AGCTGGACTCACAGCAGGTGGGCTGGCAGCAGGTGGTCACACAAGTCGGTTTGCGGCAGG
TGGTCCTACAGCAAGTCGTTTGGGTGGCCTCATAGCAAACTGGGGGGCAGCAAGGCCGGC
AGCAGCTGGACTCACAGCACGTGGGCTGGCAGCAAGGAGAGCAGCAAGAGTGGGTCATGG
TAGCAGTGGTGGAGGGCGAGCCTCTGTTTAGTGTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6R637_CAPHI

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6R637_CAPHI

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               522-632, + strand, RNAz p=0.993688

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               522-632, + strand, RNAz p=0.993688

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               345-915, gnl|bosTau2|chr19 (33501899-33501315)
               

               
               345-915, gnl|Hg17|chr17 (36515825-36515241)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               345-915, gnl|bosTau2|chr19 (33501899-33501315)
               

               
               345-915, gnl|Hg17|chr17 (36515825-36515241)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (1.28747)
               

               
               ski (0.440205)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (1.28747)
               

               
               ski (0.440205)

	345-915, gnl\|bosTau2\|chr19 (33501899-33501315)
	345-915, gnl\|Hg17\|chr17 (36515825-36515241)