Non-Coding RNA Search

Ss1.1-rnep28c_c1.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATGACTTGCACATTTA
TTGACTGAGAAGGCACTGGAGTCGGGAGGTAGTTGTACAGAAACCAAGGAGGGAAAACTG
CAGAACAAGATGCAGCTCCACAGCTCAGTGGCTTCTTCTGGGTGGATTAAGATGCGGATT
GAGAACCTCAAGGCAATATCATGAGAGCGCTAGGCCCATCGGCGCCCACGGAGAACACCT
CCAGCTCCATCGCCTCCGTGGCGTCCAGGGGGCCTTACTTGCACGGCCAGGTAGGCGCCT
GCTTCTGCTGGGTCTGGTGGCAGACCGGGACGCCCTTGCCACCCCCGGAGCCACCCCCGG
AGGAGCCGCCGCCGCAGCCGGAGCCGCCGCCGCCCCCAGAGGAGCCACCCCCGCAGCCGG
AGCCGCCGCCACCCCCACCGCCCCCGCAGCTGGGGAAGTAGCAGTCGCCGCCCCCGGACG
AGCCGCCGCAGCTGCCGCCGGACGACCCTCCTCCGTAGCCCTGGCTGGGCAAGCACGAGG
TCTGGGAGGTCTGCTGCGAGGACGAGTAGTAGCCGGAGCCACCGCCAGAGGAGCCTCCGC
CGCAGCCGGAGCCGCCACCCGAGGATCCGCCGCCGCATCCCGAGCTGCCTCCGGCGGAGC
CGCCGCTAGAGACGCCTCCGTAGCTCTGGCACTGGACCTGCTGGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATGACTTGCACATTTA
TTGACTGAGAAGGCACTGGAGTCGGGAGGTAGTTGTACAGAAACCAAGGAGGGAAAACTG
CAGAACAAGATGCAGCTCCACAGCTCAGTGGCTTCTTCTGGGTGGATTAAGATGCGGATT
GAGAACCTCAAGGCAATATCATGAGAGCGCTAGGCCCATCGGCGCCCACGGAGAACACCT
CCAGCTCCATCGCCTCCGTGGCGTCCAGGGGGCCTTACTTGCACGGCCAGGTAGGCGCCT
GCTTCTGCTGGGTCTGGTGGCAGACCGGGACGCCCTTGCCACCCCCGGAGCCACCCCCGG
AGGAGCCGCCGCCGCAGCCGGAGCCGCCGCCGCCCCCAGAGGAGCCACCCCCGCAGCCGG
AGCCGCCGCCACCCCCACCGCCCCCGCAGCTGGGGAAGTAGCAGTCGCCGCCCCCGGACG
AGCCGCCGCAGCTGCCGCCGGACGACCCTCCTCCGTAGCCCTGGCTGGGCAAGCACGAGG
TCTGGGAGGTCTGCTGCGAGGACGAGTAGTAGCCGGAGCCACCGCCAGAGGAGCCTCCGC
CGCAGCCGGAGCCGCCACCCGAGGATCCGCCGCCGCATCCCGAGCTGCCTCCGGCGGAGC
CGCCGCTAGAGACGCCTCCGTAGCTCTGGCACTGGACCTGCTGGCCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T869_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T869_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-185, - strand, RNAz p=0.76586

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-185, - strand, RNAz p=0.76586

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-683, gnl|bosTau2|chr3 (2510215-2510880)
               

               
               40-683, gnl|Hg17|chr1 (150047673-150047005)
               

               
               40-683, gnl|Mm7|chr3 (92114266-92115091)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-683, gnl|bosTau2|chr3 (2510215-2510880)
               

               
               40-683, gnl|Hg17|chr1 (150047673-150047005)
               

               
               40-683, gnl|Mm7|chr3 (92114266-92115091)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (1.404)
               

               
               nep (0.551775)
               

               
               csk (0.140746)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (1.404)
               

               
               nep (0.551775)
               

               
               csk (0.140746)

	40-683, gnl\|bosTau2\|chr3 (2510215-2510880)
	40-683, gnl\|Hg17\|chr1 (150047673-150047005)
	40-683, gnl\|Mm7\|chr3 (92114266-92115091)