Ss1.1-rnep28c_c10.5
|
CAGCACAGTTACCTGCAGCACTGCCCAGAGTTTGGGCTGGCCCATCTAGCAGCAGCACTG
CTTCTTGCAGCAGCTCTTCTGCTGGCAACAGCTCTTCTGCTGGCAACAGCCCTTCCCACA
GCCACAGCCACACGAGTTGCACCTGCAGGTGCGGCGGTAGCAGCAGACCACGGGGGTGCT
GCAGCAGCCCCCACAGCAGCCACAGCAGCAGGGGCAGCAGCCGGAGCAGCAGCCCACCCG
GTAGCATCTGCAGCTGGTGCAGCTGTTGCAGCCACCACAGCCACCACTGCAGCCACCGCA
GCCACCGCTGTAGCCACCACAGCCACCGCCGCAGCCTCCGCAGCCACCACAACTTCCACA
GCCACAGCAGCCCATGGTGTCGTTAGAGAGGACTCAGGAGAGGTGAGGAGGAGACTCAAG |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGCACAGTTACCTGCAGCACTGCCCAGAGTTTGGGCTGGCCCATCTAGCAGCAGCACTG
CTTCTTGCAGCAGCTCTTCTGCTGGCAACAGCTCTTCTGCTGGCAACAGCCCTTCCCACA
GCCACAGCCACACGAGTTGCACCTGCAGGTGCGGCGGTAGCAGCAGACCACGGGGGTGCT
GCAGCAGCCCCCACAGCAGCCACAGCAGCAGGGGCAGCAGCCGGAGCAGCAGCCCACCCG
GTAGCATCTGCAGCTGGTGCAGCTGTTGCAGCCACCACAGCCACCACTGCAGCCACCGCA
GCCACCGCTGTAGCCACCACAGCCACCGCCGCAGCCTCCGCAGCCACCACAACTTCCACA
GCCACAGCAGCCCATGGTGTCGTTAGAGAGGACTCAGGAGAGGTGAGGAGGAGACTCAAG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
273-415, - strand, RNAmicro p=0.999999 |
|
63-149, - strand, RNAmicro p=0.979463 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
273-415, - strand, RNAmicro p=0.999999 |
|
63-149, - strand, RNAmicro p=0.979463 |
|
46-180, DB803954 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB803954.1|), blast E-value=0, identity=92.2% |
|
46-180, DB806008 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB806008.1|), blast E-value=9.99995e-41, identity=91.11% |
|
52-175, CES005526 Bos taurus skin cDNA library Bos taurus cDNA clone
(gb|CF763597.1|), blast E-value=9.99995e-41, identity=92.74% |
|
52-175, CES001771 Bos taurus skin cDNA library Bos taurus cDNA clone
(gb|CF769234.1|), blast E-value=8e-39, identity=91.94% |
|
52-175, LB02982.CR_F04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE362656.1|),
blast E-value=3e-38, identity=91.94% |
|
52-175, LB02967.CR_C16 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE364493.1|),
blast E-value=3e-38, identity=91.94% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
46-180, DB803954 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB803954.1|), blast E-value=0, identity=92.2% |
|
46-180, DB806008 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB806008.1|), blast E-value=9.99995e-41, identity=91.11% |
|
52-175, CES005526 Bos taurus skin cDNA library Bos taurus cDNA clone
(gb|CF763597.1|), blast E-value=9.99995e-41, identity=92.74% |
|
52-175, CES001771 Bos taurus skin cDNA library Bos taurus cDNA clone
(gb|CF769234.1|), blast E-value=8e-39, identity=91.94% |
|
52-175, LB02982.CR_F04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE362656.1|),
blast E-value=3e-38, identity=91.94% |
|
52-175, LB02967.CR_C16 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE364493.1|),
blast E-value=3e-38, identity=91.94% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map