Non-Coding RNA Search

Ss1.1-rnep28c_e9.5

Sequence:


               
               TTTTCTTCTTAGATAAGAGTCATGTCTGTGACTTGTTCACATGAAGGGAAAGGGATCCAG
TCTAATCAGTTTTAGTAAACACAGCACTGCCAATTTATTTCTTGACCATTTCAGGCCAGT
GACACTTGTCTTGATGTGATTGGCGGTCGGGACACACCCGGAGCTAAAGTTGCGCTGTGG
ACCGAACATGGGCAGTTAAGGCAGAAGTGGAGACTGAACAGAAATGGAACCATCAGCTCC
TACCTCAGTGACCAACTTGTCCTTGATGTTAAAGGAGGAAATTATTATGACAAAACTCAT
GTAATTGTAAATCAGCCCCTGGAGGGAGAAGAAACACAGAAATGGGACATTGAAATACTG
TGAGTGTCTGCAACATCCCTGAGGAGACAGCAGAGGAAGAAGGATGCTCATGCCCTGTGG
AAAGGAAGCTACTCATCCTCATGCACCCGGATCAGTCAGCAGAATGAACTTTGTCTCCAA
GCTCCAAGACTATTGCTCTTAACCACAGAAAAGCTCAGAATATTCTTGCCAGTTATTCAG
TGTTGTTCCAATGAAGGATACGGTATGAATTCTGGTAAGGGTTCTAGTCCTGCTTGATCT
CCGGCTTTGGTGAGCAAGTTTCCTGAAGTCTGTTTTCTCTCCTCTCTACCTAACACGAAT
CCCATGCCTGATAGCCATTATAGGACACTGGTGATGGTGTCATCTGGATTAGTTATTAAT
TCCCTTGGTAGAATGCGTATATAGAACTGTGCCTTTTCTACCACACTGGATTAAATAAGC
TTGTCAGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCTTCTTAGATAAGAGTCATGTCTGTGACTTGTTCACATGAAGGGAAAGGGATCCAG
TCTAATCAGTTTTAGTAAACACAGCACTGCCAATTTATTTCTTGACCATTTCAGGCCAGT
GACACTTGTCTTGATGTGATTGGCGGTCGGGACACACCCGGAGCTAAAGTTGCGCTGTGG
ACCGAACATGGGCAGTTAAGGCAGAAGTGGAGACTGAACAGAAATGGAACCATCAGCTCC
TACCTCAGTGACCAACTTGTCCTTGATGTTAAAGGAGGAAATTATTATGACAAAACTCAT
GTAATTGTAAATCAGCCCCTGGAGGGAGAAGAAACACAGAAATGGGACATTGAAATACTG
TGAGTGTCTGCAACATCCCTGAGGAGACAGCAGAGGAAGAAGGATGCTCATGCCCTGTGG
AAAGGAAGCTACTCATCCTCATGCACCCGGATCAGTCAGCAGAATGAACTTTGTCTCCAA
GCTCCAAGACTATTGCTCTTAACCACAGAAAAGCTCAGAATATTCTTGCCAGTTATTCAG
TGTTGTTCCAATGAAGGATACGGTATGAATTCTGGTAAGGGTTCTAGTCCTGCTTGATCT
CCGGCTTTGGTGAGCAAGTTTCCTGAAGTCTGTTTTCTCTCCTCTCTACCTAACACGAAT
CCCATGCCTGATAGCCATTATAGGACACTGGTGATGGTGTCATCTGGATTAGTTATTAAT
TCCCTTGGTAGAATGCGTATATAGAACTGTGCCTTTTCTACCACACTGGATTAAATAAGC
TTGTCAGAAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869886|ref|XP_616769.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869886|ref|XP_616769.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               302-409, - strand, RNAz p=0.998553

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               302-409, - strand, RNAz p=0.998553

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               263-719, gnl|bosTau2|chr1 (22094241-22094688)
               

               
               263-719, gnl|Hg17|chr3 (99144748-99145218)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               263-719, gnl|bosTau2|chr1 (22094241-22094688)
               

               
               263-719, gnl|Hg17|chr3 (99144748-99145218)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               aor (0.195274)
               

               
               nep (0.183925)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               nep (0.183925)

	263-719, gnl\|bosTau2\|chr1 (22094241-22094688)
	263-719, gnl\|Hg17\|chr3 (99144748-99145218)