Non-Coding RNA Search

Ss1.1-rnep28c_f21.5

Sequence:


               
               GGAAGCTGGGGCCCACGAGGGGAACGGGGCTGGAAGGCAGTCCTGGGTTCTTGAGGGACT
AGTACTTGGGTCCACACAGGGAACCGTGCGTGATCACTGGTGAAGCAAGGTTCTAGAGGT
GAGATTGGTTCAGGGTTCAGCTGATGTCTGCTCCCTCTCTAGGACCTGCCTGCTGGCTCC
CGGTAAAGAGCCCCCAGCGTTGGGGCCCTCCGGGGGCCCCGCCAGAAGCTGGGCCGTTTG
GTACCGCCGGCCTCAAGGGGTGGCCCTGCCCTCTCCTCCTGGGGACCCCCAGGTTGAGAG
TCTGACGGCGAGTTACCGGCCCCTGAGTGCCTCCAGCCAGAGTTCCCTGCGCTCTCTCAT
CTCTGCTCTCTGACTCAGGACTCTCAGGGTCCCCTGGACCCTCCTCCAGCGGGATGGACT
CCTGCCACACTCTGTCTACCTTGGCCTTTTGCTCCATTGAGGGCAGCTCGGCCTCTAGTC
CTTTCTGAGAGACCGGGATGTCGGACAGGAAGCATTTGGTGCTGTTACTGGGAATTGGGC
CTGACTCTCGGGGGGTCCAGATGGTCAAGGCCAAAGGGCAAGAGGAGTATGGCTGTTTTC
CTCATAAACCTCAAAGACCCCCTCTTGGGGAGGTCTGGACTGCTGCCCCAAGTGAACTCT
GAAAGGTCAACAAAAGTGGTCAAAAGCCATTGACTTTGAATAAAGAACCTATTTGGGTAC
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGCTGGGGCCCACGAGGGGAACGGGGCTGGAAGGCAGTCCTGGGTTCTTGAGGGACT
AGTACTTGGGTCCACACAGGGAACCGTGCGTGATCACTGGTGAAGCAAGGTTCTAGAGGT
GAGATTGGTTCAGGGTTCAGCTGATGTCTGCTCCCTCTCTAGGACCTGCCTGCTGGCTCC
CGGTAAAGAGCCCCCAGCGTTGGGGCCCTCCGGGGGCCCCGCCAGAAGCTGGGCCGTTTG
GTACCGCCGGCCTCAAGGGGTGGCCCTGCCCTCTCCTCCTGGGGACCCCCAGGTTGAGAG
TCTGACGGCGAGTTACCGGCCCCTGAGTGCCTCCAGCCAGAGTTCCCTGCGCTCTCTCAT
CTCTGCTCTCTGACTCAGGACTCTCAGGGTCCCCTGGACCCTCCTCCAGCGGGATGGACT
CCTGCCACACTCTGTCTACCTTGGCCTTTTGCTCCATTGAGGGCAGCTCGGCCTCTAGTC
CTTTCTGAGAGACCGGGATGTCGGACAGGAAGCATTTGGTGCTGTTACTGGGAATTGGGC
CTGACTCTCGGGGGGTCCAGATGGTCAAGGCCAAAGGGCAAGAGGAGTATGGCTGTTTTC
CTCATAAACCTCAAAGACCCCCTCTTGGGGAGGTCTGGACTGCTGCCCCAAGTGAACTCT
GAAAGGTCAACAAAAGTGGTCAAAAGCCATTGACTTTGAATAAAGAACCTATTTGGGTAC
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               195-314, - strand, RNAz p=0.533851
               

               
               615-720, + strand, RNAz p=0.703365

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-314, - strand, RNAz p=0.533851
               

               
               615-720, + strand, RNAz p=0.703365

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145348, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145348, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr25 (3443741-3444481)
               

               
               1-720, gnl|Hg17|chr16 (2957649-2958383)
               

               
               1-720, gnl|Mm7|chr17 (21921988-21921280)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr25 (3443741-3444481)
               

               
               1-720, gnl|Hg17|chr16 (2957649-2958383)
               

               
               1-720, gnl|Mm7|chr17 (21921988-21921280)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               med (0.116252)

	195-314, - strand, RNAz p=0.533851
	615-720, + strand, RNAz p=0.703365

	1-720, gnl\|bosTau2\|chr25 (3443741-3444481)
	1-720, gnl\|Hg17\|chr16 (2957649-2958383)
	1-720, gnl\|Mm7\|chr17 (21921988-21921280)