Non-Coding RNA Search

Ss1.1-rnep29c_m23.5

Sequence:


               
               ACGACATAGTCCTGAAGTGCTTTGCCAATGGGGGCAGCCCGCCTCTCTCCTACAAGTGGG
CCAAGATCAGCGGGTACACCCACCCCTACCGTGCTGGGTCCTACCACTCCCAGCACAGCT
TCCACTCTGAGCTCTCCTACCAGGAGTCCTTCCACAGCACCATAAACCAAGGACTGAGCA
ATGGTGACCTGGTGTTGAAGGCCATCGGCCCTGAGGATGATGGGCTGTATCAGTGCACAG
TGGCCAACCACGTGGGCTACAGCGTGTGTGTGGTGGAGGTGAAGGTCTCAGACACCAAGC
GCATAGGAATGATCATCGGTGCAGTGCTGGGCTCTCTGCTCATGTTGGCCTGCCTGTTTG
TGGGCATCTGGGGGCTCGTCTGCTGGTGCTGTGGGGGCACCGGGGCCGGTGGCACCCGCG
GTGCCTTCGGTTATGGCAACGGCGGCGGGGTCGGCGGAGGGGCCTGCGGCGACTTGGCTA
ATGAGATCAGGTAAAACCTGATGCATGCTGCATGCTGCTGCGCGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGACATAGTCCTGAAGTGCTTTGCCAATGGGGGCAGCCCGCCTCTCTCCTACAAGTGGG
CCAAGATCAGCGGGTACACCCACCCCTACCGTGCTGGGTCCTACCACTCCCAGCACAGCT
TCCACTCTGAGCTCTCCTACCAGGAGTCCTTCCACAGCACCATAAACCAAGGACTGAGCA
ATGGTGACCTGGTGTTGAAGGCCATCGGCCCTGAGGATGATGGGCTGTATCAGTGCACAG
TGGCCAACCACGTGGGCTACAGCGTGTGTGTGGTGGAGGTGAAGGTCTCAGACACCAAGC
GCATAGGAATGATCATCGGTGCAGTGCTGGGCTCTCTGCTCATGTTGGCCTGCCTGTTTG
TGGGCATCTGGGGGCTCGTCTGCTGGTGCTGTGGGGGCACCGGGGCCGGTGGCACCCGCG
GTGCCTTCGGTTATGGCAACGGCGGCGGGGTCGGCGGAGGGGCCTGCGGCGACTTGGCTA
ATGAGATCAGGTAAAACCTGATGCATGCTGCATGCTGCTGCGCGGCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6P3A4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P3A4_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               9-167, + strand, RNAz p=0.751181

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-167, + strand, RNAz p=0.751181

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               9-172, gnl|bosTau2|chr3 (5585127-5585290)
               

               
               9-172, gnl|canFam2|chr38 (25295638-25295387)
               

               
               9-172, gnl|dasNov1|scaffold_12735 (77443-77756)
               

               
               9-172, gnl|hg17|chr1 (156640535-156640849)
               

               
               9-172, gnl|Hg17|chr1 (156640770-156640607)
               

               
               9-172, gnl|loxAfr1|scaffold_87856 (1532-1210)
               

               
               9-172, gnl|mm7|chr1 (172531002-172530714)
               

               
               9-172, gnl|Mm7|chr1 (172530790-172530953)
               

               
               9-172, gnl|monDom2|scaffold_13 (61901820-61901514)
               

               
               9-172, gnl|oryCun1|scaffold_212627 (103525-103838)
               

               
               9-172, gnl|panTro1|chr1 (138722453-138722767)
               

               
               9-172, gnl|rheMac2|chr1 (138471453-138471768)
               

               
               9-172, gnl|rn3|chr13 (88755661-88755359)
               


               
               289-528, gnl|bosTau2|chr3 (5586463-5586711)
               

               
               289-528, gnl|Hg17|chr1 (156638947-156638708)
               

               
               289-528, gnl|Mm7|chr1 (172532129-172532368)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-172, gnl|bosTau2|chr3 (5585127-5585290)
               

               
               9-172, gnl|canFam2|chr38 (25295638-25295387)
               

               
               9-172, gnl|dasNov1|scaffold_12735 (77443-77756)
               

               
               9-172, gnl|hg17|chr1 (156640535-156640849)
               

               
               9-172, gnl|Hg17|chr1 (156640770-156640607)
               

               
               9-172, gnl|loxAfr1|scaffold_87856 (1532-1210)
               

               
               9-172, gnl|mm7|chr1 (172531002-172530714)
               

               
               9-172, gnl|Mm7|chr1 (172530790-172530953)
               

               
               9-172, gnl|monDom2|scaffold_13 (61901820-61901514)
               

               
               9-172, gnl|oryCun1|scaffold_212627 (103525-103838)
               

               
               9-172, gnl|panTro1|chr1 (138722453-138722767)
               

               
               9-172, gnl|rheMac2|chr1 (138471453-138471768)
               

               
               9-172, gnl|rn3|chr13 (88755661-88755359)
               


               
               289-528, gnl|bosTau2|chr3 (5586463-5586711)
               

               
               289-528, gnl|Hg17|chr1 (156638947-156638708)
               

               
               289-528, gnl|Mm7|chr1 (172532129-172532368)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.36785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)

	9-172, gnl\|bosTau2\|chr3 (5585127-5585290)
	9-172, gnl\|canFam2\|chr38 (25295638-25295387)
	9-172, gnl\|dasNov1\|scaffold_12735 (77443-77756)
	9-172, gnl\|hg17\|chr1 (156640535-156640849)
	9-172, gnl\|Hg17\|chr1 (156640770-156640607)
	9-172, gnl\|loxAfr1\|scaffold_87856 (1532-1210)
	9-172, gnl\|mm7\|chr1 (172531002-172530714)
	9-172, gnl\|Mm7\|chr1 (172530790-172530953)
	9-172, gnl\|monDom2\|scaffold_13 (61901820-61901514)
	9-172, gnl\|oryCun1\|scaffold_212627 (103525-103838)
	9-172, gnl\|panTro1\|chr1 (138722453-138722767)
	9-172, gnl\|rheMac2\|chr1 (138471453-138471768)
	9-172, gnl\|rn3\|chr13 (88755661-88755359)

	289-528, gnl\|bosTau2\|chr3 (5586463-5586711)
	289-528, gnl\|Hg17\|chr1 (156638947-156638708)
	289-528, gnl\|Mm7\|chr1 (172532129-172532368)