Ss1.1-rnep30c_f1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGAAGCTTCAGAGGGTGGTACGACAAAAAGAACGGCAGCTGACTGATGCCAAACGCTG TGTGAGATTTGTAGAGGCGGCGGCAGAGGAGAGAGAGCAGCAGAAAGAGGCTTCTTGGAA ACATAACCAGGAATTGCGAAAAGCCTTGCAGCAGCTACAGGGAGAATTGCAGAATAAGAG CCAACAGCTTCATACTCTAGAGGCTGAAAAATGCAATGCGATTAGAATCCAAGAGCAACA CATTCAGCACCTCAACCACAGTCTGAGTCACAAAGAGCAGCTGCTTCAGGAATTTCGGGA ACTCCTGCAGTACCGAGATAACTCGGACAAAACCCTTGATGCGAATGAAATGTTGCTTGA GAAACTTCGGCAAAGAATCCAAGATAGAGATGTTGCTCTAGAGCGGGCTATAGACGAGAA GTTCTCCAGTCTAGAAGAAAAAGAAAAGGAACTGCGCCAACTTCACCTTGCTGTGAGGGA GCGAGATCATGACTTAGAGAGACTGCGAGGTGTTCTCTCCTCTAATGAAGCTACTATCCA GAGTATGGAGAGTCTCCTGAGGGCCAAAGGCCTGGAAGTGGAACAGTTATCTGCTACCTG TCAGAACCTCCAATGGCTGAGAGAAGAAATGGAAACCAAATTTAGCCATTGGCAAAAGGA GCAAGAAAGTATCATTCAGCAGTTGCAGACATCTCTGCATGACAGGAACAAAGAAGTGGA GGATCTTAGTGCAACGTTGCTCTGCAAACTCGGACCAGGGCAGAGTGAGATAGCTGAGGA GCTGTGCCAGCGTCTACAGCGAAAGGAGAGGATGCTGCAGGACCTTCTAAGCGATCGAAA CAAACAAGCAGTGGAATATGAAATGGAGATTCAGGGCCTGCTTCAGTCCATGAGCACCAG GGAGCAGGAGAGCCAAGCTGCTGCAGAAAAGATGGTACAAGCCCTAATGGAAAGAAATTC AGAATTACAGGCCCTGCGCCAGTATCTGGGAGGGAAAGATTTCACAATGTCCCAAGCACT CATCTCTAACCGACCAGCCGAAGTTACCTCCATCAGCCCCCATCTTGGAGAGCAGACTGA TCAAGGTTTGATGCATATACCCTCCAGAGATGATAGCACTTCATTGACTGCCAAAGGGGA TGCCAGCATACCCAGGTCCTCAGGAGGAGACTTGGATACAGTCACAGGGCTAGAAAAAGA ACTGAGCAGTGCCAAAGAGGAACTTGAGCTCATGGCTAAAAAAGAGAGAGAAAGTCGGAT GGAGCTTTCTGCCCTCCAGTCCATGATGGCCGTGCAAGAGGAAGAGCTGCAAGTGCAGGC TGCTGATCTGGAGTCTTTGACCAGGAACATACAGATTAAAGAAGACCTCATAAAGGACCT GCAGATGCAGCTGGTTGATCCTGAAGACATCCCGGCTATGGAACGCCTGACCCAAGAAGT CTTACTCCTTCGGGAAAAAGTTGCTTCAGTGGAATCACAGGGTCAGGAAACTTCTGGAAA CCGAAGACAACAATTGTTGCTGATGCTGGAAGGACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGAAGCTTCAGAGGGTGGTACGACAAAAAGAACGGCAGCTGACTGATGCCAAACGCTG TGTGAGATTTGTAGAGGCGGCGGCAGAGGAGAGAGAGCAGCAGAAAGAGGCTTCTTGGAA ACATAACCAGGAATTGCGAAAAGCCTTGCAGCAGCTACAGGGAGAATTGCAGAATAAGAG CCAACAGCTTCATACTCTAGAGGCTGAAAAATGCAATGCGATTAGAATCCAAGAGCAACA CATTCAGCACCTCAACCACAGTCTGAGTCACAAAGAGCAGCTGCTTCAGGAATTTCGGGA ACTCCTGCAGTACCGAGATAACTCGGACAAAACCCTTGATGCGAATGAAATGTTGCTTGA GAAACTTCGGCAAAGAATCCAAGATAGAGATGTTGCTCTAGAGCGGGCTATAGACGAGAA GTTCTCCAGTCTAGAAGAAAAAGAAAAGGAACTGCGCCAACTTCACCTTGCTGTGAGGGA GCGAGATCATGACTTAGAGAGACTGCGAGGTGTTCTCTCCTCTAATGAAGCTACTATCCA GAGTATGGAGAGTCTCCTGAGGGCCAAAGGCCTGGAAGTGGAACAGTTATCTGCTACCTG TCAGAACCTCCAATGGCTGAGAGAAGAAATGGAAACCAAATTTAGCCATTGGCAAAAGGA GCAAGAAAGTATCATTCAGCAGTTGCAGACATCTCTGCATGACAGGAACAAAGAAGTGGA GGATCTTAGTGCAACGTTGCTCTGCAAACTCGGACCAGGGCAGAGTGAGATAGCTGAGGA GCTGTGCCAGCGTCTACAGCGAAAGGAGAGGATGCTGCAGGACCTTCTAAGCGATCGAAA CAAACAAGCAGTGGAATATGAAATGGAGATTCAGGGCCTGCTTCAGTCCATGAGCACCAG GGAGCAGGAGAGCCAAGCTGCTGCAGAAAAGATGGTACAAGCCCTAATGGAAAGAAATTC AGAATTACAGGCCCTGCGCCAGTATCTGGGAGGGAAAGATTTCACAATGTCCCAAGCACT CATCTCTAACCGACCAGCCGAAGTTACCTCCATCAGCCCCCATCTTGGAGAGCAGACTGA TCAAGGTTTGATGCATATACCCTCCAGAGATGATAGCACTTCATTGACTGCCAAAGGGGA TGCCAGCATACCCAGGTCCTCAGGAGGAGACTTGGATACAGTCACAGGGCTAGAAAAAGA ACTGAGCAGTGCCAAAGAGGAACTTGAGCTCATGGCTAAAAAAGAGAGAGAAAGTCGGAT GGAGCTTTCTGCCCTCCAGTCCATGATGGCCGTGCAAGAGGAAGAGCTGCAAGTGCAGGC TGCTGATCTGGAGTCTTTGACCAGGAACATACAGATTAAAGAAGACCTCATAAAGGACCT GCAGATGCAGCTGGTTGATCCTGAAGACATCCCGGCTATGGAACGCCTGACCCAAGAAGT CTTACTCCTTCGGGAAAAAGTTGCTTCAGTGGAATCACAGGGTCAGGAAACTTCTGGAAA CCGAAGACAACAATTGTTGCTGATGCTGGAAGGACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1165-1270, + strand, RNAz p=0.568047 | |
| 1374-1513, - strand, RNAz p=0.956776 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1165-1270, + strand, RNAz p=0.568047 | |
| 1374-1513, - strand, RNAz p=0.956776 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of CR749273, + |
| Aligned organism(s): 80 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
| 128-290, gnl|bosTau2|chr3 (18010174-18010012) | |
| 128-290, gnl|canFam2|chr17 (60362995-60362814) | |
| 128-290, gnl|canFam2|chr17 (60362814-60362995) | |
| 128-290, gnl|echTel1|scaffold_323307 (127640-127459) | |
| 128-290, gnl|echTel1|scaffold_323307 (127459-127640) | |
| 128-290, gnl|galGal2|chrUn (102426861-102427027) | |
| 128-290, gnl|galGal2|chrUn (102427027-102426861) | |
| 128-290, gnl|hg17|chr1 (142407873-142408054) | |
| 128-290, gnl|Hg17|chr1 (142408038-142407876) | |
| 128-290, gnl|hg17|chr1_random (510172-510353) | |
| 128-290, gnl|loxAfr1|scaffold_3215 (79356-79537) | |
| 128-290, gnl|loxAfr1|scaffold_3215 (79537-79356) | |
| 128-290, gnl|mm7|chr3 (97626726-97626907) | |
| 128-290, gnl|mm7|chr3 (97626907-97626726) | |
| 128-290, gnl|Mm7|chr3 (97626891-97626729) | |
| 128-290, gnl|monDom2|scaffold_44 (847207-847020) | |
| 128-290, gnl|monDom2|scaffold_44 (847020-847202) | |
| 128-290, gnl|oryCun1|scaffold_213369 (161953-161772) | |
| 128-290, gnl|oryCun1|scaffold_213369 (161772-161953) | |
| 128-290, gnl|panTro1|chr1 (113042656-113042837) | |
| 128-290, gnl|panTro1|chr1_random (18044855-18044674) | |
| 128-290, gnl|rheMac2|chr1 (123281386-123281207) | |
| 128-290, gnl|rheMac2|chr1 (123281206-123281386) | |
| 128-290, gnl|rn3|chr2 (192564193-192564374) | |
| 128-290, gnl|rn3|chr2 (192564374-192564193) | |
| 128-290, gnl|xenTro1|scaffold_608 (751213-751035) | |
| 128-290, gnl|xenTro1|scaffold_608 (751035-751213) | |
| 390-541, gnl|bosTau2|chr3 (18008879-18008729) | |
| 390-541, gnl|canFam2|chr17 (60364325-60364214) | |
| 390-541, gnl|danRer3|chr20 (43323447-43323345) | |
| 390-541, gnl|echTel1|scaffold_323307 (130037-129926) | |
| 390-541, gnl|fr1|chrUn (238117442-238117551) | |
| 390-541, gnl|galGal2|chrUn (102426035-102426146) | |
| 390-541, gnl|hg17|chr1 (142406539-142406650) | |
| 390-541, gnl|Hg17|chr1 (142406693-142406543) | |
| 390-541, gnl|loxAfr1|scaffold_50110 (4110-3999) | |
| 390-541, gnl|mm7|chr3 (97625413-97625524) | |
| 390-541, gnl|Mm7|chr3 (97625567-97625417) | |
| 390-541, gnl|monDom2|scaffold_44 (849421-849310) | |
| 390-541, gnl|oryCun1|scaffold_213369 (163210-163099) | |
| 390-541, gnl|panTro1|chr1 (113044171-113044060) | |
| 390-541, gnl|rheMac2|chr1 (123282709-123282598) | |
| 390-541, gnl|rn3|chr2 (192560929-192561040) | |
| 390-541, gnl|tetNig1|chr15 (4921910-4921808) | |
| 390-541, gnl|xenTro1|scaffold_608 (752256-752145) | |
| 720-915, gnl|bosTau2|chr3 (18006737-18006542) | |
| 720-915, gnl|Hg17|chr1 (142404685-142404490) | |
| 720-915, gnl|Mm7|chr3 (97623296-97623101) | |
| 917-1085, gnl|bosTau2|chr3 (18003112-18002944) | |
| 917-1085, gnl|canFam2|chr17 (60369591-60369416) | |
| 917-1085, gnl|dasNov1|scaffold_21028 (48455-48630) | |
| 917-1085, gnl|echTel1|scaffold_323307 (136674-136499) | |
| 917-1085, gnl|galGal2|chrUn (102424224-102424378) | |
| 917-1085, gnl|hg17|chr1 (142401159-142401331) | |
| 917-1085, gnl|Hg17|chr1 (142401338-142401173) | |
| 917-1085, gnl|loxAfr1|scaffold_50110 (10102-9927) | |
| 917-1085, gnl|mm7|chr3 (97619041-97619219) | |
| 917-1085, gnl|Mm7|chr3 (97619226-97619055) | |
| 917-1085, gnl|monDom2|scaffold_44 (852961-852714) | |
| 917-1085, gnl|oryCun1|scaffold_213369 (166591-166415) | |
| 917-1085, gnl|panTro1|chr1 (113049562-113049390) | |
| 917-1085, gnl|rheMac2|chr1 (127367592-127367416) | |
| 917-1085, gnl|rn3|chr2 (192554471-192554649) | |
| 1165-1270, gnl|bosTau2|chr3 (17999249-17999145) | |
| 1165-1270, gnl|canFam2|chr17 (60374160-60373937) | |
| 1165-1270, gnl|dasNov1|scaffold_234 (146882-147103) | |
| 1165-1270, gnl|echTel1|scaffold_323307 (139506-139289) | |
| 1165-1270, gnl|Hg17|chr1 (142399006-142398902) | |
| 1165-1270, gnl|hg17|chr1_random (589618-589841) | |
| 1165-1270, gnl|loxAfr1|scaffold_50110 (12380-12158) | |
| 1165-1270, gnl|mm7|chr3 (97617888-97618104) | |
| 1165-1270, gnl|Mm7|chr3 (97618056-97617952) | |
| 1165-1270, gnl|monDom2|scaffold_44 (854444-854214) | |
| 1165-1270, gnl|oryCun1|scaffold_213369 (171180-170969) | |
| 1165-1270, gnl|panTro1|chr1 (113053826-113053603) | |
| 1165-1270, gnl|rheMac2|chr1 (123289251-123289029) | |
| 1165-1270, gnl|rn3|chr2 (192553333-192553556) | |
| 1374-1513, gnl|bosTau2|chr3 (17997126-17996987) | |
| 1374-1513, gnl|Hg17|chr1 (142395242-142394981) | |
| 1374-1513, gnl|Mm7|chr3 (97614595-97614456) |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 128-290, gnl|bosTau2|chr3 (18010174-18010012) | |
| 128-290, gnl|canFam2|chr17 (60362995-60362814) | |
| 128-290, gnl|canFam2|chr17 (60362814-60362995) | |
| 128-290, gnl|echTel1|scaffold_323307 (127640-127459) | |
| 128-290, gnl|echTel1|scaffold_323307 (127459-127640) | |
| 128-290, gnl|galGal2|chrUn (102426861-102427027) | |
| 128-290, gnl|galGal2|chrUn (102427027-102426861) | |
| 128-290, gnl|hg17|chr1 (142407873-142408054) | |
| 128-290, gnl|Hg17|chr1 (142408038-142407876) | |
| 128-290, gnl|hg17|chr1_random (510172-510353) | |
| 128-290, gnl|loxAfr1|scaffold_3215 (79356-79537) | |
| 128-290, gnl|loxAfr1|scaffold_3215 (79537-79356) | |
| 128-290, gnl|mm7|chr3 (97626726-97626907) | |
| 128-290, gnl|mm7|chr3 (97626907-97626726) | |
| 128-290, gnl|Mm7|chr3 (97626891-97626729) | |
| 128-290, gnl|monDom2|scaffold_44 (847207-847020) | |
| 128-290, gnl|monDom2|scaffold_44 (847020-847202) | |
| 128-290, gnl|oryCun1|scaffold_213369 (161953-161772) | |
| 128-290, gnl|oryCun1|scaffold_213369 (161772-161953) | |
| 128-290, gnl|panTro1|chr1 (113042656-113042837) | |
| 128-290, gnl|panTro1|chr1_random (18044855-18044674) | |
| 128-290, gnl|rheMac2|chr1 (123281386-123281207) | |
| 128-290, gnl|rheMac2|chr1 (123281206-123281386) | |
| 128-290, gnl|rn3|chr2 (192564193-192564374) | |
| 128-290, gnl|rn3|chr2 (192564374-192564193) | |
| 128-290, gnl|xenTro1|scaffold_608 (751213-751035) | |
| 128-290, gnl|xenTro1|scaffold_608 (751035-751213) | |
| 390-541, gnl|bosTau2|chr3 (18008879-18008729) | |
| 390-541, gnl|canFam2|chr17 (60364325-60364214) | |
| 390-541, gnl|danRer3|chr20 (43323447-43323345) | |
| 390-541, gnl|echTel1|scaffold_323307 (130037-129926) | |
| 390-541, gnl|fr1|chrUn (238117442-238117551) | |
| 390-541, gnl|galGal2|chrUn (102426035-102426146) | |
| 390-541, gnl|hg17|chr1 (142406539-142406650) | |
| 390-541, gnl|Hg17|chr1 (142406693-142406543) | |
| 390-541, gnl|loxAfr1|scaffold_50110 (4110-3999) | |
| 390-541, gnl|mm7|chr3 (97625413-97625524) | |
| 390-541, gnl|Mm7|chr3 (97625567-97625417) | |
| 390-541, gnl|monDom2|scaffold_44 (849421-849310) | |
| 390-541, gnl|oryCun1|scaffold_213369 (163210-163099) | |
| 390-541, gnl|panTro1|chr1 (113044171-113044060) | |
| 390-541, gnl|rheMac2|chr1 (123282709-123282598) | |
| 390-541, gnl|rn3|chr2 (192560929-192561040) | |
| 390-541, gnl|tetNig1|chr15 (4921910-4921808) | |
| 390-541, gnl|xenTro1|scaffold_608 (752256-752145) | |
| 720-915, gnl|bosTau2|chr3 (18006737-18006542) | |
| 720-915, gnl|Hg17|chr1 (142404685-142404490) | |
| 720-915, gnl|Mm7|chr3 (97623296-97623101) | |
| 917-1085, gnl|bosTau2|chr3 (18003112-18002944) | |
| 917-1085, gnl|canFam2|chr17 (60369591-60369416) | |
| 917-1085, gnl|dasNov1|scaffold_21028 (48455-48630) | |
| 917-1085, gnl|echTel1|scaffold_323307 (136674-136499) | |
| 917-1085, gnl|galGal2|chrUn (102424224-102424378) | |
| 917-1085, gnl|hg17|chr1 (142401159-142401331) | |
| 917-1085, gnl|Hg17|chr1 (142401338-142401173) | |
| 917-1085, gnl|loxAfr1|scaffold_50110 (10102-9927) | |
| 917-1085, gnl|mm7|chr3 (97619041-97619219) | |
| 917-1085, gnl|Mm7|chr3 (97619226-97619055) | |
| 917-1085, gnl|monDom2|scaffold_44 (852961-852714) | |
| 917-1085, gnl|oryCun1|scaffold_213369 (166591-166415) | |
| 917-1085, gnl|panTro1|chr1 (113049562-113049390) | |
| 917-1085, gnl|rheMac2|chr1 (127367592-127367416) | |
| 917-1085, gnl|rn3|chr2 (192554471-192554649) | |
| 1165-1270, gnl|bosTau2|chr3 (17999249-17999145) | |
| 1165-1270, gnl|canFam2|chr17 (60374160-60373937) | |
| 1165-1270, gnl|dasNov1|scaffold_234 (146882-147103) | |
| 1165-1270, gnl|echTel1|scaffold_323307 (139506-139289) | |
| 1165-1270, gnl|Hg17|chr1 (142399006-142398902) | |
| 1165-1270, gnl|hg17|chr1_random (589618-589841) | |
| 1165-1270, gnl|loxAfr1|scaffold_50110 (12380-12158) | |
| 1165-1270, gnl|mm7|chr3 (97617888-97618104) | |
| 1165-1270, gnl|Mm7|chr3 (97618056-97617952) | |
| 1165-1270, gnl|monDom2|scaffold_44 (854444-854214) | |
| 1165-1270, gnl|oryCun1|scaffold_213369 (171180-170969) | |
| 1165-1270, gnl|panTro1|chr1 (113053826-113053603) | |
| 1165-1270, gnl|rheMac2|chr1 (123289251-123289029) | |
| 1165-1270, gnl|rn3|chr2 (192553333-192553556) | |
| 1374-1513, gnl|bosTau2|chr3 (17997126-17996987) | |
| 1374-1513, gnl|Hg17|chr1 (142395242-142394981) | |
| 1374-1513, gnl|Mm7|chr3 (97614595-97614456) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| lnt (0.142308) |