Non-Coding RNA Search

Ss1.1-rnep30c_l11.5

Sequence:


               
               CTGCCTGCCAACGCTCCAGTCATAAAAACGGAGCCCAGTGATGACTACGAGCCTGCCCTC
ACCTGTGGACCAGTGAGCCAGGGCCTGAACCCGCTCACGAAGCCTTGCTATGGCCCGCCA
CTCGCCCTGCCACCCGATCCCAGCTCCTGCCTTGTGGCCGGCTTTCCACCCTGTCCACAG
AGAAGCGCCGTGATGTCTCCGCCACCCAGCGCCAGCCCGAAGCTCCACGACCTCTCCTGT
GCCCCCTACAGCAAAGGCATGGCCGGCCCGGGCCACCTTGGACTTCAGCGGCCAGCCGGA
GGGGTCCTTGGAGGCCAGGAGGCACCGAGACCCGGGGGCCCACATCCCGGCGCTCCCCAG
CCACCACCCCCCGCCCTGCTGCAGCCACAGTAAACGAAATAATACGAAACGACCTCTCCA
GCACCAATATCCACTCATAGTTGGCAACGTGGGACTCTCAGAAGCTCCGCAGCATGGACG
TGATGGCAACAACTTCTGAGTAAACACCCTGAACTCACACGGGCACCTGGTACCTCTCAG
AACTGCCCACTGCAGGCTGACGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTGCCAACGCTCCAGTCATAAAAACGGAGCCCAGTGATGACTACGAGCCTGCCCTC
ACCTGTGGACCAGTGAGCCAGGGCCTGAACCCGCTCACGAAGCCTTGCTATGGCCCGCCA
CTCGCCCTGCCACCCGATCCCAGCTCCTGCCTTGTGGCCGGCTTTCCACCCTGTCCACAG
AGAAGCGCCGTGATGTCTCCGCCACCCAGCGCCAGCCCGAAGCTCCACGACCTCTCCTGT
GCCCCCTACAGCAAAGGCATGGCCGGCCCGGGCCACCTTGGACTTCAGCGGCCAGCCGGA
GGGGTCCTTGGAGGCCAGGAGGCACCGAGACCCGGGGGCCCACATCCCGGCGCTCCCCAG
CCACCACCCCCCGCCCTGCTGCAGCCACAGTAAACGAAATAATACGAAACGACCTCTCCA
GCACCAATATCCACTCATAGTTGGCAACGTGGGACTCTCAGAAGCTCCGCAGCATGGACG
TGATGGCAACAACTTCTGAGTAAACACCCTGAACTCACACGGGCACCTGGTACCTCTCAG
AACTGCCCACTGCAGGCTGACGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               276-390, - strand, RNAz p=0.622526

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-390, - strand, RNAz p=0.622526

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               15-189, gnl|bosTau2|chr24 (1016020-1016194)
               

               
               15-189, gnl|canFam2|chr1 (4056519-4056203)
               

               
               15-189, gnl|danRer3|chr19 (24847683-24848014)
               

               
               15-189, gnl|dasNov1|scaffold_2229 (128247-127938)
               

               
               15-189, gnl|fr1|chrUn (125038801-125039128)
               

               
               15-189, gnl|galGal2|chr2 (56432002-56431688)
               

               
               15-189, gnl|hg17|chr18 (75347220-75347539)
               

               
               15-189, gnl|Hg17|chr18 (75347237-75347411)
               

               
               15-189, gnl|loxAfr1|scaffold_114964 (1283-1598)
               

               
               15-189, gnl|mm7|chr18 (80922437-80922115)
               

               
               15-189, gnl|Mm7|chr18 (80922418-80922220)
               

               
               15-189, gnl|monDom2|scaffold_3 (118586313-118585994)
               

               
               15-189, gnl|rheMac2|chr18 (72786144-72786463)
               

               
               15-189, gnl|rn3|chr18 (77605755-77605433)
               

               
               15-189, gnl|tetNig1|chr8 (2248740-2248413)
               

               
               15-189, gnl|xenTro1|scaffold_185 (579208-579527)
               


               
               207-390, gnl|bosTau2|chr24 (1016188-1016377)
               

               
               207-390, gnl|Hg17|chr18 (75347405-75347618)
               

               
               207-390, gnl|Mm7|chr18 (80922226-80922034)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-189, gnl|bosTau2|chr24 (1016020-1016194)
               

               
               15-189, gnl|canFam2|chr1 (4056519-4056203)
               

               
               15-189, gnl|danRer3|chr19 (24847683-24848014)
               

               
               15-189, gnl|dasNov1|scaffold_2229 (128247-127938)
               

               
               15-189, gnl|fr1|chrUn (125038801-125039128)
               

               
               15-189, gnl|galGal2|chr2 (56432002-56431688)
               

               
               15-189, gnl|hg17|chr18 (75347220-75347539)
               

               
               15-189, gnl|Hg17|chr18 (75347237-75347411)
               

               
               15-189, gnl|loxAfr1|scaffold_114964 (1283-1598)
               

               
               15-189, gnl|mm7|chr18 (80922437-80922115)
               

               
               15-189, gnl|Mm7|chr18 (80922418-80922220)
               

               
               15-189, gnl|monDom2|scaffold_3 (118586313-118585994)
               

               
               15-189, gnl|rheMac2|chr18 (72786144-72786463)
               

               
               15-189, gnl|rn3|chr18 (77605755-77605433)
               

               
               15-189, gnl|tetNig1|chr8 (2248740-2248413)
               

               
               15-189, gnl|xenTro1|scaffold_185 (579208-579527)
               


               
               207-390, gnl|bosTau2|chr24 (1016188-1016377)
               

               
               207-390, gnl|Hg17|chr18 (75347405-75347618)
               

               
               207-390, gnl|Mm7|chr18 (80922226-80922034)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	15-189, gnl\|bosTau2\|chr24 (1016020-1016194)
	15-189, gnl\|canFam2\|chr1 (4056519-4056203)
	15-189, gnl\|danRer3\|chr19 (24847683-24848014)
	15-189, gnl\|dasNov1\|scaffold_2229 (128247-127938)
	15-189, gnl\|fr1\|chrUn (125038801-125039128)
	15-189, gnl\|galGal2\|chr2 (56432002-56431688)
	15-189, gnl\|hg17\|chr18 (75347220-75347539)
	15-189, gnl\|Hg17\|chr18 (75347237-75347411)
	15-189, gnl\|loxAfr1\|scaffold_114964 (1283-1598)
	15-189, gnl\|mm7\|chr18 (80922437-80922115)
	15-189, gnl\|Mm7\|chr18 (80922418-80922220)
	15-189, gnl\|monDom2\|scaffold_3 (118586313-118585994)
	15-189, gnl\|rheMac2\|chr18 (72786144-72786463)
	15-189, gnl\|rn3\|chr18 (77605755-77605433)
	15-189, gnl\|tetNig1\|chr8 (2248740-2248413)
	15-189, gnl\|xenTro1\|scaffold_185 (579208-579527)

	207-390, gnl\|bosTau2\|chr24 (1016188-1016377)
	207-390, gnl\|Hg17\|chr18 (75347405-75347618)
	207-390, gnl\|Mm7\|chr18 (80922226-80922034)