Non-Coding RNA Search

Ss1.1-rnep31c_a8.5

Sequence:


               
               AAGCAAGACAGGAAAGAAAATAAGTATTAGATAGATACGTATAGTAGGGACGGGGAAATC
TCTTTCCCCTTTCTGAAATTAATAGTCTTTGTTAATACACATTTTATTTATTCTGAGTTT
GTTCTATATAAACTATTATAAATTTTGGATTGGGAAAAAAAATTCCACTGAACTTTAAAG
TTACAATGTATGTATTTGCGAGCTTAAATGCCTTTGAGATTATAATATAGATTTGCAGGA
ACCAAAAACTTTTAAAATAATTAAATTTTTAAAAGGGCACATACTGTGTTGTTTGGGCTT
GCTCTCAGTTAATGCAAACTCTGATTGCAAATGGATGTCATGTTTCGTACCTTTTTTATC
AGGAAAAAAGCAGCAAGCCTTCAGGTGTTCCAGTGATGCCTGACTCAATGAGCTGGACTT
TATGCTGCTCTTTACAGTAAGAGGTGTTGCATTGTATATGGGGACTGTGTGTGCACTGGC
ATCTAAGACAGTGACCTCAACAATTTTAGCTTTGCACAAACCATAGAGAACAATGTTGGA
TGACTACATAATCAGTTATAACATTCTGGCAGCTAAATTGCTACAAGAGTTTCTTCTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCAAGACAGGAAAGAAAATAAGTATTAGATAGATACGTATAGTAGGGACGGGGAAATC
TCTTTCCCCTTTCTGAAATTAATAGTCTTTGTTAATACACATTTTATTTATTCTGAGTTT
GTTCTATATAAACTATTATAAATTTTGGATTGGGAAAAAAAATTCCACTGAACTTTAAAG
TTACAATGTATGTATTTGCGAGCTTAAATGCCTTTGAGATTATAATATAGATTTGCAGGA
ACCAAAAACTTTTAAAATAATTAAATTTTTAAAAGGGCACATACTGTGTTGTTTGGGCTT
GCTCTCAGTTAATGCAAACTCTGATTGCAAATGGATGTCATGTTTCGTACCTTTTTTATC
AGGAAAAAAGCAGCAAGCCTTCAGGTGTTCCAGTGATGCCTGACTCAATGAGCTGGACTT
TATGCTGCTCTTTACAGTAAGAGGTGTTGCATTGTATATGGGGACTGTGTGTGCACTGGC
ATCTAAGACAGTGACCTCAACAATTTTAGCTTTGCACAAACCATAGAGAACAATGTTGGA
TGACTACATAATCAGTTATAACATTCTGGCAGCTAAATTGCTACAAGAGTTTCTTCTCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               263-382, - strand, RNAz p=0.527297

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-382, - strand, RNAz p=0.527297

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-600, gnl|bosTau2|chr7 (32294852-32294242)
               

               
               1-600, gnl|Hg17|chr5 (134220591-134221182)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr7 (32294852-32294242)
               

               
               1-600, gnl|Hg17|chr5 (134220591-134221182)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               ill (0.175593)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               ill (0.175593)

	1-600, gnl\|bosTau2\|chr7 (32294852-32294242)
	1-600, gnl\|Hg17\|chr5 (134220591-134221182)