Non-Coding RNA Search

Ss1.1-rnep31c_e8.5

Sequence:


               
               GAGGGAGAGAGGAAGGGAGGGAGGTGGAATTTCATTTCTTCCACTAAAGCGTTTGCGGAG
ACTTCAAGGTATAATCTATCCCAGATCCTTTCCCAGAGAGAAACTTGGCGATCACGTTTT
CACATGATGCTCACGCTCAGGGCGCTTCAATTATCCCTCCCCACAAAGATAGGTGGCGCG
TGTTTCAGGGTCTCTCTCTCTCCTGCTCCGCAGGAATAACGGTCCTGCCTCCCGACACTC
TTGGCGAGGTTTTGTACAGTTTGCGGTTTGTGTTTCCTGGAGTGGCCGAAAGAGATCAGT
TCTAACCTGCTCCGCAGGAATAACGGTCCTGCCTCCCGACACTCTTGGCGAGGTTTTGTA
CAGTTTGCTCCGGGAGCTGTTTCTTCGCTTCCACCTTTTTCTTCCCCACACTTCGCGGCT
TCTTCATGCTTTTTCTTCTCACCATTTCTGGCCAAAACTACNAACAAGACTTCGCAGATC
GAGCCTGCGTGCTGCCGAAGCAGGGCGCCGAGTCCATGCGAACTGCCATCTGATCCGCTC
TTATCAATGAAGCAGCCGATCATGGCGGATGGCCCCCGGTGCAAGAGGCGCAAACAAGCC
AATCCCAGGAGGAAAAACGTGGTGAACTATGACNATGTAGTGGACACGGGTTCTGAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGAGAGAGGAAGGGAGGGAGGTGGAATTTCATTTCTTCCACTAAAGCGTTTGCGGAG
ACTTCAAGGTATAATCTATCCCAGATCCTTTCCCAGAGAGAAACTTGGCGATCACGTTTT
CACATGATGCTCACGCTCAGGGCGCTTCAATTATCCCTCCCCACAAAGATAGGTGGCGCG
TGTTTCAGGGTCTCTCTCTCTCCTGCTCCGCAGGAATAACGGTCCTGCCTCCCGACACTC
TTGGCGAGGTTTTGTACAGTTTGCGGTTTGTGTTTCCTGGAGTGGCCGAAAGAGATCAGT
TCTAACCTGCTCCGCAGGAATAACGGTCCTGCCTCCCGACACTCTTGGCGAGGTTTTGTA
CAGTTTGCTCCGGGAGCTGTTTCTTCGCTTCCACCTTTTTCTTCCCCACACTTCGCGGCT
TCTTCATGCTTTTTCTTCTCACCATTTCTGGCCAAAACTACNAACAAGACTTCGCAGATC
GAGCCTGCGTGCTGCCGAAGCAGGGCGCCGAGTCCATGCGAACTGCCATCTGATCCGCTC
TTATCAATGAAGCAGCCGATCATGGCGGATGGCCCCCGGTGCAAGAGGCGCAAACAAGCC
AATCCCAGGAGGAAAAACGTGGTGAACTATGACNATGTAGTGGACACGGGTTCTGAAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28881673|emb|CAD59922.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28881673|emb|CAD59922.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-355, + strand, RNAz p=0.612313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-355, + strand, RNAz p=0.612313

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014795, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014795, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-477, gnl|bosTau2|chr2 (35633222-35632746)
               

               
               1-477, gnl|Hg17|chr2 (145111719-145111238)
               

               
               1-477, gnl|Mm7|chr2 (45120614-45120134)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-477, gnl|bosTau2|chr2 (35633222-35632746)
               

               
               1-477, gnl|Hg17|chr2 (145111719-145111238)
               

               
               1-477, gnl|Mm7|chr2 (45120614-45120134)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.36785)
               

               
               csp (0.161186)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               csp (0.161186)

	1-477, gnl\|bosTau2\|chr2 (35633222-35632746)
	1-477, gnl\|Hg17\|chr2 (145111719-145111238)
	1-477, gnl\|Mm7\|chr2 (45120614-45120134)