Ss1.1-rnep31c_n21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGGCAGAGAATGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGCTGGCCGCAGATGA CTTCAGGAGCAAGTATGAGACGGAGGTGTCCATGCGGCAGCTGGTGGAGTCAGACATCAA CAGCCTGCGTAGGATCTTGGACGAGCTGACCCTCTGCAAGGCTGACCTGGAGGCCCAGGT GGAGTCCCTGAAGGAGGAGCTGCTCTGCCTTAAGAAGAACCATGAGGAGGAAGTCAACTC CCTGCGGAGCCAGCTCGGGGACCGCCTCAACATCGAGGTGGACGCCGCTCCCACCGTCGA CCTGAACAGCGTGCTCAGCGAGACCAGGAGCCAGTACGAGGCCCTCGTGGAGACCAACCG CAGGGACGTGGAGGAATGGTTCGCCAGGCAGACCGAGGAGCTGAACAAGCAGGTGGTGTC CAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAA CGCCCTGGAGGTGGAGCTGCAGGCCCAGCACAACCTGAGGGACTCTCTGGAGAACACGCT GACGGAGACGGAGGCCCGCTACAGCTCGCAGCTGGCCCAGGTGCAGGGCCTGATCGGCAA CGTGGAGGCTCAGCTGGCGGAGATCCGGGCTGACCTGGAGCGTCAGAACCAGGAGTACCA GGTGCTGCTGGACGTGCGGGCCCGGCTGGAGTGTGAGATCAACACGTACCGGGGGCTGCT GGAGAGCGAGGACTGCAAGCTGCCCAGCAACCCCTGCGCCACGACCAACGCACAGCCTAT TGGGCACTGCGTCAGCAGTTCCTGCACCCCTTGTGGCCCTCGCACCTGCTTCAAGTCCTG TAACACCTTTGGGTGCTAGATGGCTGGCGCCCGCAGGAGGATTGTGCAAAGACGAAAGAC CGGTGAGGGACCAGCCCTGCTCTCTGTCCACCATCAAGGCTGTAGACCCACTCCAGGCAT CCCCATAACTCATGGTCTGCAAGGAGAATGTCCAGGCTCACCTGATCTTCTTCCTTCGAC GCCGCTCTCTTGTAGTTATCCCGTGACCTGATGGTCTGACATGTTTGGGCTGGGAACGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGGCAGAGAATGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGCTGGCCGCAGATGA CTTCAGGAGCAAGTATGAGACGGAGGTGTCCATGCGGCAGCTGGTGGAGTCAGACATCAA CAGCCTGCGTAGGATCTTGGACGAGCTGACCCTCTGCAAGGCTGACCTGGAGGCCCAGGT GGAGTCCCTGAAGGAGGAGCTGCTCTGCCTTAAGAAGAACCATGAGGAGGAAGTCAACTC CCTGCGGAGCCAGCTCGGGGACCGCCTCAACATCGAGGTGGACGCCGCTCCCACCGTCGA CCTGAACAGCGTGCTCAGCGAGACCAGGAGCCAGTACGAGGCCCTCGTGGAGACCAACCG CAGGGACGTGGAGGAATGGTTCGCCAGGCAGACCGAGGAGCTGAACAAGCAGGTGGTGTC CAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAA CGCCCTGGAGGTGGAGCTGCAGGCCCAGCACAACCTGAGGGACTCTCTGGAGAACACGCT GACGGAGACGGAGGCCCGCTACAGCTCGCAGCTGGCCCAGGTGCAGGGCCTGATCGGCAA CGTGGAGGCTCAGCTGGCGGAGATCCGGGCTGACCTGGAGCGTCAGAACCAGGAGTACCA GGTGCTGCTGGACGTGCGGGCCCGGCTGGAGTGTGAGATCAACACGTACCGGGGGCTGCT GGAGAGCGAGGACTGCAAGCTGCCCAGCAACCCCTGCGCCACGACCAACGCACAGCCTAT TGGGCACTGCGTCAGCAGTTCCTGCACCCCTTGTGGCCCTCGCACCTGCTTCAAGTCCTG TAACACCTTTGGGTGCTAGATGGCTGGCGCCCGCAGGAGGATTGTGCAAAGACGAAAGAC CGGTGAGGGACCAGCCCTGCTCTCTGTCCACCATCAAGGCTGTAGACCCACTCCAGGCAT CCCCATAACTCATGGTCTGCAAGGAGAATGTCCAGGCTCACCTGATCTTCTTCCTTCGAC GCCGCTCTCTTGTAGTTATCCCGTGACCTGATGGTCTGACATGTTTGGGCTGGGAACGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 623-740, + strand, RNAz p=0.57602 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 623-740, + strand, RNAz p=0.57602 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 69-245, gnl|bosTau2|chr23 (601048-601225) | |
| 69-245, gnl|Hg17|chr17 (36776408-36776234) | |
| 69-245, gnl|Mm7|chr11 (100135636-100135460) | |
| 74-230, gnl|bosTau2|chr19 (33772631-33772787) | |
| 74-230, gnl|canFam2|chr9 (25154882-25154695) | |
| 74-230, gnl|danRer3|chr19 (1223193-1223358) | |
| 74-230, gnl|dasNov1|scaffold_21574 (58494-58681) | |
| 74-230, gnl|echTel1|scaffold_319256 (48719-48532) | |
| 74-230, gnl|fr1|chrUn (253379909-253379737) | |
| 74-230, gnl|galGal2|chr27_random (546571-546398) | |
| 74-230, gnl|hg17|chr17 (36274572-36274759) | |
| 74-230, gnl|Hg17|chr17 (36274739-36274583) | |
| 74-230, gnl|loxAfr1|scaffold_41873 (4981-4792) | |
| 74-230, gnl|mm7|chr11 (99528576-99528757) | |
| 74-230, gnl|Mm7|chr11 (99528738-99528582) | |
| 74-230, gnl|monDom2|scaffold_18 (50373605-50373787) | |
| 74-230, gnl|oryCun1|scaffold_206837 (4164-4346) | |
| 74-230, gnl|panTro1|chr19 (39524351-39524538) | |
| 74-230, gnl|rheMac2|chr16 (50980984-50981171) | |
| 74-230, gnl|rn3|chr10 (88339988-88340169) | |
| 74-230, gnl|tetNig1|chr18 (5133772-5133936) | |
| 74-230, gnl|xenTro1|scaffold_574 (164846-164672) | |
| 389-511, gnl|bosTau2|chr19 (33603387-33603509) | |
| 389-511, gnl|canFam2|chr9 (25054501-25054645) | |
| 389-511, gnl|danRer3|chr11 (8075275-8075130) | |
| 389-511, gnl|dasNov1|scaffold_6415 (108412-108268) | |
| 389-511, gnl|echTel1|scaffold_291652 (39307-39162) | |
| 389-511, gnl|fr1|chrUn (253387864-253388007) | |
| 389-511, gnl|galGal2|chr27_random (598430-598571) | |
| 389-511, gnl|Hg17|chr17 (36372068-36371946) | |
| 389-511, gnl|hg17|chr17_random (2598375-2598520) | |
| 389-511, gnl|loxAfr1|scaffold_55493 (2247-2102) | |
| 389-511, gnl|mm7|chr11 (99627161-99627016) | |
| 389-511, gnl|Mm7|chr11 (99627155-99627033) | |
| 389-511, gnl|monDom2|scaffold_18 (51354431-51354296) | |
| 389-511, gnl|oryCun1|scaffold_206837 (93083-92938) | |
| 389-511, gnl|panTro1|chr19 (39621937-39621792) | |
| 389-511, gnl|rheMac2|chr16 (51078664-51078519) | |
| 389-511, gnl|rn3|chr10 (88478217-88478072) | |
| 389-511, gnl|xenTro1|scaffold_394 (337026-336902) | |
| 521-740, gnl|bosTau2|chr19 (33589472-33589691) | |
| 521-740, gnl|canFam2|chr9 (25043319-25043073) | |
| 521-740, gnl|canFam2|chr9 (25043083-25043322) | |
| 521-740, gnl|danRer3|chr19 (1233618-1233851) | |
| 521-740, gnl|danRer3|chr19 (1222637-1222385) | |
| 521-740, gnl|dasNov1|scaffold_4155 (3265-3513) | |
| 521-740, gnl|dasNov1|scaffold_4155 (3501-3262) | |
| 521-740, gnl|echTel1|scaffold_158520 (2184-2403) | |
| 521-740, gnl|echTel1|scaffold_158520 (2403-2181) | |
| 521-740, gnl|fr1|chrUn (253380798-253380561) | |
| 521-740, gnl|fr1|chrUn (253380562-253380803) | |
| 521-740, gnl|galGal2|chr27_random (592256-592025) | |
| 521-740, gnl|galGal2|chr27_random (592026-592256) | |
| 521-740, gnl|hg17|chr17 (36388571-36388816) | |
| 521-740, gnl|Hg17|chr17 (36388799-36388580) | |
| 521-740, gnl|hg17|chr17_random (2581642-2581879) | |
| 521-740, gnl|loxAfr1|scaffold_72845 (29391-29643) | |
| 521-740, gnl|loxAfr1|scaffold_72845 (29627-29388) | |
| 521-740, gnl|mm7|chr11 (99647579-99647825) | |
| 521-740, gnl|mm7|chr11 (99647815-99647579) | |
| 521-740, gnl|Mm7|chr11 (99647807-99647588) | |
| 521-740, gnl|monDom2|scaffold_18 (50580761-50581002) | |
| 521-740, gnl|monDom2|scaffold_18 (50580995-50580761) | |
| 521-740, gnl|oryCun1|scaffold_206837 (110509-110755) | |
| 521-740, gnl|oryCun1|scaffold_206837 (110745-110508) | |
| 521-740, gnl|panTro1|chr19 (39638740-39638985) | |
| 521-740, gnl|panTro1|chr19 (39638976-39638739) | |
| 521-740, gnl|rheMac2|chr16 (51095515-51095760) | |
| 521-740, gnl|rheMac2|chr16 (51095751-51095514) | |
| 521-740, gnl|rn3|chr10 (88498548-88498794) | |
| 521-740, gnl|rn3|chr10 (88498784-88498548) | |
| 521-740, gnl|tetNig1|chr18 (5132907-5133137) | |
| 521-740, gnl|tetNig1|chr18 (5133136-5132907) | |
| 521-740, gnl|xenTro1|scaffold_394 (449456-449703) | |
| 521-740, gnl|xenTro1|scaffold_394 (373708-373471) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-245, gnl|bosTau2|chr23 (601048-601225) | |
| 69-245, gnl|Hg17|chr17 (36776408-36776234) | |
| 69-245, gnl|Mm7|chr11 (100135636-100135460) | |
| 74-230, gnl|bosTau2|chr19 (33772631-33772787) | |
| 74-230, gnl|canFam2|chr9 (25154882-25154695) | |
| 74-230, gnl|danRer3|chr19 (1223193-1223358) | |
| 74-230, gnl|dasNov1|scaffold_21574 (58494-58681) | |
| 74-230, gnl|echTel1|scaffold_319256 (48719-48532) | |
| 74-230, gnl|fr1|chrUn (253379909-253379737) | |
| 74-230, gnl|galGal2|chr27_random (546571-546398) | |
| 74-230, gnl|hg17|chr17 (36274572-36274759) | |
| 74-230, gnl|Hg17|chr17 (36274739-36274583) | |
| 74-230, gnl|loxAfr1|scaffold_41873 (4981-4792) | |
| 74-230, gnl|mm7|chr11 (99528576-99528757) | |
| 74-230, gnl|Mm7|chr11 (99528738-99528582) | |
| 74-230, gnl|monDom2|scaffold_18 (50373605-50373787) | |
| 74-230, gnl|oryCun1|scaffold_206837 (4164-4346) | |
| 74-230, gnl|panTro1|chr19 (39524351-39524538) | |
| 74-230, gnl|rheMac2|chr16 (50980984-50981171) | |
| 74-230, gnl|rn3|chr10 (88339988-88340169) | |
| 74-230, gnl|tetNig1|chr18 (5133772-5133936) | |
| 74-230, gnl|xenTro1|scaffold_574 (164846-164672) | |
| 389-511, gnl|bosTau2|chr19 (33603387-33603509) | |
| 389-511, gnl|canFam2|chr9 (25054501-25054645) | |
| 389-511, gnl|danRer3|chr11 (8075275-8075130) | |
| 389-511, gnl|dasNov1|scaffold_6415 (108412-108268) | |
| 389-511, gnl|echTel1|scaffold_291652 (39307-39162) | |
| 389-511, gnl|fr1|chrUn (253387864-253388007) | |
| 389-511, gnl|galGal2|chr27_random (598430-598571) | |
| 389-511, gnl|Hg17|chr17 (36372068-36371946) | |
| 389-511, gnl|hg17|chr17_random (2598375-2598520) | |
| 389-511, gnl|loxAfr1|scaffold_55493 (2247-2102) | |
| 389-511, gnl|mm7|chr11 (99627161-99627016) | |
| 389-511, gnl|Mm7|chr11 (99627155-99627033) | |
| 389-511, gnl|monDom2|scaffold_18 (51354431-51354296) | |
| 389-511, gnl|oryCun1|scaffold_206837 (93083-92938) | |
| 389-511, gnl|panTro1|chr19 (39621937-39621792) | |
| 389-511, gnl|rheMac2|chr16 (51078664-51078519) | |
| 389-511, gnl|rn3|chr10 (88478217-88478072) | |
| 389-511, gnl|xenTro1|scaffold_394 (337026-336902) | |
| 521-740, gnl|bosTau2|chr19 (33589472-33589691) | |
| 521-740, gnl|canFam2|chr9 (25043319-25043073) | |
| 521-740, gnl|canFam2|chr9 (25043083-25043322) | |
| 521-740, gnl|danRer3|chr19 (1233618-1233851) | |
| 521-740, gnl|danRer3|chr19 (1222637-1222385) | |
| 521-740, gnl|dasNov1|scaffold_4155 (3265-3513) | |
| 521-740, gnl|dasNov1|scaffold_4155 (3501-3262) | |
| 521-740, gnl|echTel1|scaffold_158520 (2184-2403) | |
| 521-740, gnl|echTel1|scaffold_158520 (2403-2181) | |
| 521-740, gnl|fr1|chrUn (253380798-253380561) | |
| 521-740, gnl|fr1|chrUn (253380562-253380803) | |
| 521-740, gnl|galGal2|chr27_random (592256-592025) | |
| 521-740, gnl|galGal2|chr27_random (592026-592256) | |
| 521-740, gnl|hg17|chr17 (36388571-36388816) | |
| 521-740, gnl|Hg17|chr17 (36388799-36388580) | |
| 521-740, gnl|hg17|chr17_random (2581642-2581879) | |
| 521-740, gnl|loxAfr1|scaffold_72845 (29391-29643) | |
| 521-740, gnl|loxAfr1|scaffold_72845 (29627-29388) | |
| 521-740, gnl|mm7|chr11 (99647579-99647825) | |
| 521-740, gnl|mm7|chr11 (99647815-99647579) | |
| 521-740, gnl|Mm7|chr11 (99647807-99647588) | |
| 521-740, gnl|monDom2|scaffold_18 (50580761-50581002) | |
| 521-740, gnl|monDom2|scaffold_18 (50580995-50580761) | |
| 521-740, gnl|oryCun1|scaffold_206837 (110509-110755) | |
| 521-740, gnl|oryCun1|scaffold_206837 (110745-110508) | |
| 521-740, gnl|panTro1|chr19 (39638740-39638985) | |
| 521-740, gnl|panTro1|chr19 (39638976-39638739) | |
| 521-740, gnl|rheMac2|chr16 (51095515-51095760) | |
| 521-740, gnl|rheMac2|chr16 (51095751-51095514) | |
| 521-740, gnl|rn3|chr10 (88498548-88498794) | |
| 521-740, gnl|rn3|chr10 (88498784-88498548) | |
| 521-740, gnl|tetNig1|chr18 (5132907-5133137) | |
| 521-740, gnl|tetNig1|chr18 (5133136-5132907) | |
| 521-740, gnl|xenTro1|scaffold_394 (449456-449703) | |
| 521-740, gnl|xenTro1|scaffold_394 (373708-373471) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (2.57495) | |
| ski (0.146735) |