Non-Coding RNA Search

Ss1.1-rnep31c_n7.5

Sequence:


               
               GGGGGGGGGAGAGGAGAGGAAGGCTCCAGGTAGGGAAAAGGCCCGCGAGTCCCGTGGCCC
CTCTCGCCCCCGTCATTTGTGCCCTCGGCTGTCTGGTTGGGGTCGATGCATCATCTCCTC
AGGTCCACATCTATTCCTGTTTCTATGCTATGCTAGTGACACAAAGCACCGGCATTGTTC
ACAGGATGCACAAACAAGTCAAACCAAACCACCGCGCAAACCAAACGTGCAAAACAAAAT
CATGTACACGCGCTTGGCACCAGCCTCACGCCTGCCCAACCAGTGCTTCTGGGCCTGGGA
CTCTGGGGGGTGGGGTGGGGGACCATCCGGCAAAGGGTGCAGGGTGTCCCATCCACACCC
AAACAGGGGCCGGAGGTGAGTCGGGGAAAACGGGACGTCCCGGGCAGGGCTGGGATGCTG
ACACCTGTCTGACTTGGGGAAAGTGACCACCGGGCGAGGGGGCTGGGGGAGGGAGTCCTT
TCCTTTTAAAACACATCTGCTAAAGTGCTCTGGACAACTGGCAGGTTAGCCAGGGGCAGG
GCACTAAGGTCAGGGCTTTCCCAAGGCCAGCACGGGAGGCGGGGGTGAGGAGGGGCTGGG
CCAGGCTCTATGCATTGGGCTCTGTGCATAGTATGGGCTTCCTGGGGCCCAGGAAAGCCT
GCCGAGGCCGAGGCAGGAAAGGACTGCAGCAGGAGGAACACATCTCAAAGTGCCTGTCAG
GGTTGGCTCAAAGCACAGTGAATCACGTGTCAGACATGGGGAGGGCCTCCCTGGGCCCGG
GGCCCCGTCAGGTGGTGTGCTGCCCAGCCCGGCCTCTCCTGCCCCTGAGCTGCGGCCGGA
GGGGGTGCGGGCTGGTGGCAGCGGTGCATCTTCACGTGGGGGGGCTGGGCAGTGCTTTTA
CCAAATGCCGCTTGACCTGCCCCCCGGGGGTGCAAGAATCCGGGCTGAGGCTCGCTTTGG
AACATGGTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGGGGGAGAGGAGAGGAAGGCTCCAGGTAGGGAAAAGGCCCGCGAGTCCCGTGGCCC
CTCTCGCCCCCGTCATTTGTGCCCTCGGCTGTCTGGTTGGGGTCGATGCATCATCTCCTC
AGGTCCACATCTATTCCTGTTTCTATGCTATGCTAGTGACACAAAGCACCGGCATTGTTC
ACAGGATGCACAAACAAGTCAAACCAAACCACCGCGCAAACCAAACGTGCAAAACAAAAT
CATGTACACGCGCTTGGCACCAGCCTCACGCCTGCCCAACCAGTGCTTCTGGGCCTGGGA
CTCTGGGGGGTGGGGTGGGGGACCATCCGGCAAAGGGTGCAGGGTGTCCCATCCACACCC
AAACAGGGGCCGGAGGTGAGTCGGGGAAAACGGGACGTCCCGGGCAGGGCTGGGATGCTG
ACACCTGTCTGACTTGGGGAAAGTGACCACCGGGCGAGGGGGCTGGGGGAGGGAGTCCTT
TCCTTTTAAAACACATCTGCTAAAGTGCTCTGGACAACTGGCAGGTTAGCCAGGGGCAGG
GCACTAAGGTCAGGGCTTTCCCAAGGCCAGCACGGGAGGCGGGGGTGAGGAGGGGCTGGG
CCAGGCTCTATGCATTGGGCTCTGTGCATAGTATGGGCTTCCTGGGGCCCAGGAAAGCCT
GCCGAGGCCGAGGCAGGAAAGGACTGCAGCAGGAGGAACACATCTCAAAGTGCCTGTCAG
GGTTGGCTCAAAGCACAGTGAATCACGTGTCAGACATGGGGAGGGCCTCCCTGGGCCCGG
GGCCCCGTCAGGTGGTGTGCTGCCCAGCCCGGCCTCTCCTGCCCCTGAGCTGCGGCCGGA
GGGGGTGCGGGCTGGTGGCAGCGGTGCATCTTCACGTGGGGGGGCTGGGCAGTGCTTTTA
CCAAATGCCGCTTGACCTGCCCCCCGGGGGTGCAAGAATCCGGGCTGAGGCTCGCTTTGG
AACATGGTCATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-92, - strand, RNAz p=0.997133

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-92, - strand, RNAz p=0.997133

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               2-136, - strand, RNAmicro p=0.99888

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               2-136, - strand, RNAmicro p=0.99888

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_020134, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_020134, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-972, gnl|bosTau2|chr11 (55322171-55321191)
               

               
               1-972, gnl|Hg17|chr2 (27082453-27081440)
               

               
               1-972, gnl|Mm7|chr5 (29829803-29828764)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-972, gnl|bosTau2|chr11 (55322171-55321191)
               

               
               1-972, gnl|Hg17|chr2 (27082453-27081440)
               

               
               1-972, gnl|Mm7|chr5 (29829803-29828764)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nep (0.183925)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-972, gnl\|bosTau2\|chr11 (55322171-55321191)
	1-972, gnl\|Hg17\|chr2 (27082453-27081440)
	1-972, gnl\|Mm7\|chr5 (29829803-29828764)