Non-Coding RNA Search

Ss1.1-rnep31c_p9.5

Sequence:


               
               GGCTTGCGGCGGCTGGCAGAGGTTGCGGCCCGGTGGTCCCTGCTGCGCGCCCCGAGCCCC
GCAAGCCATGCAGATGTCGTACGCCATCCGGTGCGCTTTCTACCAGCTGCTGCTGGCCGC
GCTAATGCTGGTAGCGATGCTGCAGCTGCTCTACCTGTCGCTGCTGTCCGGGCTGCATGG
GCAGGAGGAGCAAGACCAATATTTCGAGTTCTTCCCCCCGTCCCCGCGGTCGGTGGACCA
AGTCAAGGCGCAGCTCCGCACCGCGCTGGCCTCCGGAGGCGTCCTGGACGCTAGCGGTGA
CTACCGCGTCTACAGGGGCCTACTGAAGACCACCATGGACCCCAACGATGTGATCCTGGC
GACGCACGCCAGTGTGGACAACCTGCTGCATCTATCGGGCCTGTTGGAGCGTTGGGAGGG
CCCGCTCTCCGTGTCGGTGTTCGCGGCCACCAAGGAGGAGGCGCAGCTGGCCACGGTGCT
GACCTATGCGCTGAGCAGCCACTGCCCCGATATGCGCGCCAGGGTCGCCATGCACCTGGT
GTGCCCCTCACGCTATGAGGCCGCCGTGCCCGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTGCGGCGGCTGGCAGAGGTTGCGGCCCGGTGGTCCCTGCTGCGCGCCCCGAGCCCC
GCAAGCCATGCAGATGTCGTACGCCATCCGGTGCGCTTTCTACCAGCTGCTGCTGGCCGC
GCTAATGCTGGTAGCGATGCTGCAGCTGCTCTACCTGTCGCTGCTGTCCGGGCTGCATGG
GCAGGAGGAGCAAGACCAATATTTCGAGTTCTTCCCCCCGTCCCCGCGGTCGGTGGACCA
AGTCAAGGCGCAGCTCCGCACCGCGCTGGCCTCCGGAGGCGTCCTGGACGCTAGCGGTGA
CTACCGCGTCTACAGGGGCCTACTGAAGACCACCATGGACCCCAACGATGTGATCCTGGC
GACGCACGCCAGTGTGGACAACCTGCTGCATCTATCGGGCCTGTTGGAGCGTTGGGAGGG
CCCGCTCTCCGTGTCGGTGTTCGCGGCCACCAAGGAGGAGGCGCAGCTGGCCACGGTGCT
GACCTATGCGCTGAGCAGCCACTGCCCCGATATGCGCGCCAGGGTCGCCATGCACCTGGT
GTGCCCCTCACGCTATGAGGCCGCCGTGCCCGATCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-319, + strand, RNAz p=0.670067

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, + strand, RNAz p=0.670067

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-576, gnl|bosTau2|chr29 (37170812-37171387)
               

               
               1-576, gnl|canFam2|chr18 (53990961-53990443)
               

               
               1-576, gnl|danRer3|chr13 (3755936-3756483)
               

               
               1-576, gnl|dasNov1|scaffold_92500 (4152-3634)
               

               
               1-576, gnl|echTel1|scaffold_308206 (40788-41307)
               

               
               1-576, gnl|fr1|chrUn (202862489-202863027)
               

               
               1-576, gnl|hg17|chr11 (65870927-65871445)
               

               
               1-576, gnl|Hg17|chr11 (65871659-65871084)
               

               
               1-576, gnl|loxAfr1|scaffold_165523 (4468-4987)
               

               
               1-576, gnl|mm7|chr19 (4934450-4933932)
               

               
               1-576, gnl|Mm7|chr19 (4933716-4934291)
               

               
               1-576, gnl|monDom2|scaffold_107 (2619671-2619120)
               

               
               1-576, gnl|panTro1|chr9 (67125554-67126072)
               

               
               1-576, gnl|rheMac2|chr14 (8104754-8104236)
               

               
               1-576, gnl|rn3|chr1 (207813245-207812727)
               

               
               1-576, gnl|tetNig1|chrUn_random (21750701-21750182)
               

               
               1-576, gnl|xenTro1|scaffold_521 (249713-250249)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr29 (37170812-37171387)
               

               
               1-576, gnl|canFam2|chr18 (53990961-53990443)
               

               
               1-576, gnl|danRer3|chr13 (3755936-3756483)
               

               
               1-576, gnl|dasNov1|scaffold_92500 (4152-3634)
               

               
               1-576, gnl|echTel1|scaffold_308206 (40788-41307)
               

               
               1-576, gnl|fr1|chrUn (202862489-202863027)
               

               
               1-576, gnl|hg17|chr11 (65870927-65871445)
               

               
               1-576, gnl|Hg17|chr11 (65871659-65871084)
               

               
               1-576, gnl|loxAfr1|scaffold_165523 (4468-4987)
               

               
               1-576, gnl|mm7|chr19 (4934450-4933932)
               

               
               1-576, gnl|Mm7|chr19 (4933716-4934291)
               

               
               1-576, gnl|monDom2|scaffold_107 (2619671-2619120)
               

               
               1-576, gnl|panTro1|chr9 (67125554-67126072)
               

               
               1-576, gnl|rheMac2|chr14 (8104754-8104236)
               

               
               1-576, gnl|rn3|chr1 (207813245-207812727)
               

               
               1-576, gnl|tetNig1|chrUn_random (21750701-21750182)
               

               
               1-576, gnl|xenTro1|scaffold_521 (249713-250249)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               nco (0.161734)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               nco (0.161734)
               

               
               eep (0.122564)

	1-576, gnl\|bosTau2\|chr29 (37170812-37171387)
	1-576, gnl\|canFam2\|chr18 (53990961-53990443)
	1-576, gnl\|danRer3\|chr13 (3755936-3756483)
	1-576, gnl\|dasNov1\|scaffold_92500 (4152-3634)
	1-576, gnl\|echTel1\|scaffold_308206 (40788-41307)
	1-576, gnl\|fr1\|chrUn (202862489-202863027)
	1-576, gnl\|hg17\|chr11 (65870927-65871445)
	1-576, gnl\|Hg17\|chr11 (65871659-65871084)
	1-576, gnl\|loxAfr1\|scaffold_165523 (4468-4987)
	1-576, gnl\|mm7\|chr19 (4934450-4933932)
	1-576, gnl\|Mm7\|chr19 (4933716-4934291)
	1-576, gnl\|monDom2\|scaffold_107 (2619671-2619120)
	1-576, gnl\|panTro1\|chr9 (67125554-67126072)
	1-576, gnl\|rheMac2\|chr14 (8104754-8104236)
	1-576, gnl\|rn3\|chr1 (207813245-207812727)
	1-576, gnl\|tetNig1\|chrUn_random (21750701-21750182)
	1-576, gnl\|xenTro1\|scaffold_521 (249713-250249)