Ss1.1-rnep34c_g13.5
|
CAATCGGCTCCATTTTGTTGTTGGACCTTGTCGCAGCCAGCTGGGTGTTTTCCGTTGTCG
CGTTGCAAGCATTGTCTCCTGAGGCTTGGACTTTTTGGCCTGGACGATGAGACACGCAAA
GAGAGCTTATTGTCCTGATTGGGATGAAAAAGATTGGGATTATGAAAGATGGAAGAGCAG
CAGCAGTAGTCATAAAAGAAGAAAGAGATCACATAGCAGTGCCCGGGAGAACAAGCGCTG
CAGATATAATCACTCTAAAACATCTGATAGCTATTACTTGGAAAGCAGATCTATAAATGA
GAAAGATTACCATAGTCGACGCTACATTGATGAATACAGAAATGACTACAATCAAGGATG
TGAACCTGGACATCGCCATAGAGATTATGAAAGCAGATATCAGAACCATAGTAGCAAGTC
CTCTGGTAGAAGTGGAAGAAGTAGTTATAAAAGCAAATACAGAATTCACCACAGTACTTC
ACATCATCGTTCACATGGGGTATGCAATCTTTTAAAATATTTTGGAAATTTTATTTCCCA
TGTGAAACAGGAAAACTTGAATTTGTGTTTGATTATTTGAGAAAGTTCTGTTTAAGATGA
AGTCATCTCAATTTTAACTTGCAGGGTTCTTTGTGTTTGTGCATTGGATAGGAAATTCCT
GAAGTGCAGTACATATTTATATAGTAACATCTTATTACAAGATGGCAACTAATTGTCATT
CCAGTGAAATAATGGGGGTAATTTAATTTAGGTTAGTTTATAATGGATTACAAGATATTC
TGAAAGTTTTTCTTATTATACTACAAGAAATCAGATTTTGTTTTGATAGTCTTACTATAA
GAAGAAATGGGATTTTTGTATTTGAGTGAGGATTATGTGTGCCCTTGTTCTGGCAAAGCA
TGTTCTCCAATCCTTTTTTCACTAAACCACTTAACAGATTTGAACATTATGGGTTATGTG
TTAATTTGGAAATCAAGCTCAGATGACATTTCAGATAGTGTTGTTATATGCCAAATTTTG
TTTTCGCCCCAAATTAGGGTTTTAATTTTATTTATTGTTTCTTGATAGTTGCTTTTCTTA
GATTAGGTAGGAAGTTTGGCCACAGTCTACTTTTGACAAGTAACTATTACATTCTACAGT
TTTGCAACATTAAATTAGGACATTAGGAACTTTTAAATTATGTTTCAGTGAATGCTACAA
TTAAGCATTTTCTTTAAAAAAAAAAAAGAAAAACAATTGTATTATGTTTTGTTGCCTTGC
CACTTTGAGTATCTTATCTGAAAATCTGTTCCTTGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAATCGGCTCCATTTTGTTGTTGGACCTTGTCGCAGCCAGCTGGGTGTTTTCCGTTGTCG
CGTTGCAAGCATTGTCTCCTGAGGCTTGGACTTTTTGGCCTGGACGATGAGACACGCAAA
GAGAGCTTATTGTCCTGATTGGGATGAAAAAGATTGGGATTATGAAAGATGGAAGAGCAG
CAGCAGTAGTCATAAAAGAAGAAAGAGATCACATAGCAGTGCCCGGGAGAACAAGCGCTG
CAGATATAATCACTCTAAAACATCTGATAGCTATTACTTGGAAAGCAGATCTATAAATGA
GAAAGATTACCATAGTCGACGCTACATTGATGAATACAGAAATGACTACAATCAAGGATG
TGAACCTGGACATCGCCATAGAGATTATGAAAGCAGATATCAGAACCATAGTAGCAAGTC
CTCTGGTAGAAGTGGAAGAAGTAGTTATAAAAGCAAATACAGAATTCACCACAGTACTTC
ACATCATCGTTCACATGGGGTATGCAATCTTTTAAAATATTTTGGAAATTTTATTTCCCA
TGTGAAACAGGAAAACTTGAATTTGTGTTTGATTATTTGAGAAAGTTCTGTTTAAGATGA
AGTCATCTCAATTTTAACTTGCAGGGTTCTTTGTGTTTGTGCATTGGATAGGAAATTCCT
GAAGTGCAGTACATATTTATATAGTAACATCTTATTACAAGATGGCAACTAATTGTCATT
CCAGTGAAATAATGGGGGTAATTTAATTTAGGTTAGTTTATAATGGATTACAAGATATTC
TGAAAGTTTTTCTTATTATACTACAAGAAATCAGATTTTGTTTTGATAGTCTTACTATAA
GAAGAAATGGGATTTTTGTATTTGAGTGAGGATTATGTGTGCCCTTGTTCTGGCAAAGCA
TGTTCTCCAATCCTTTTTTCACTAAACCACTTAACAGATTTGAACATTATGGGTTATGTG
TTAATTTGGAAATCAAGCTCAGATGACATTTCAGATAGTGTTGTTATATGCCAAATTTTG
TTTTCGCCCCAAATTAGGGTTTTAATTTTATTTATTGTTTCTTGATAGTTGCTTTTCTTA
GATTAGGTAGGAAGTTTGGCCACAGTCTACTTTTGACAAGTAACTATTACATTCTACAGT
TTTGCAACATTAAATTAGGACATTAGGAACTTTTAAATTATGTTTCAGTGAATGCTACAA
TTAAGCATTTTCTTTAAAAAAAAAAAAGAAAAACAATTGTATTATGTTTTGTTGCCTTGC
CACTTTGAGTATCTTATCTGAAAATCTGTTCCTTGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
7-113, gnl|bosTau2|chr2 (50968321-50968427) |
|
7-113, gnl|canFam2|chr37 (13065005-13065415) |
|
7-113, gnl|dasNov1|scaffold_71564 (4559-4215) |
|
7-113, gnl|echTel1|scaffold_278816 (7456-7140) |
|
7-113, gnl|hg17|chr2 (201554634-201555045) |
|
7-113, gnl|Hg17|chr2 (201554892-201554786) |
|
7-113, gnl|loxAfr1|scaffold_11493 (8312-8728) |
|
7-113, gnl|mm7|chr1 (58674913-58675230) |
|
7-113, gnl|oryCun1|scaffold_212053 (218115-218487) |
|
7-113, gnl|panTro1|chr13 (91534295-91534713) |
|
7-113, gnl|rheMac2|chr12 (64617243-64617664) |
|
7-113, gnl|rn3|chr9 (57228787-57229107) |
| |
|
255-1296, gnl|bosTau2|chr2 (50969749-50970777) |
|
255-1296, gnl|Hg17|chr2 (201551733-201550653) |
|
255-1296, gnl|Mm7|chr1 (58672418-58671507) |
| |
|
273-513, gnl|bosTau2|chr16 (14587705-14587938) |
|
273-513, gnl|Hg17|chr5 (177978383-177978150) |
|
273-513, gnl|Mm7|chr11 (51228559-51228791) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
7-113, gnl|bosTau2|chr2 (50968321-50968427) |
|
7-113, gnl|canFam2|chr37 (13065005-13065415) |
|
7-113, gnl|dasNov1|scaffold_71564 (4559-4215) |
|
7-113, gnl|echTel1|scaffold_278816 (7456-7140) |
|
7-113, gnl|hg17|chr2 (201554634-201555045) |
|
7-113, gnl|Hg17|chr2 (201554892-201554786) |
|
7-113, gnl|loxAfr1|scaffold_11493 (8312-8728) |
|
7-113, gnl|mm7|chr1 (58674913-58675230) |
|
7-113, gnl|oryCun1|scaffold_212053 (218115-218487) |
|
7-113, gnl|panTro1|chr13 (91534295-91534713) |
|
7-113, gnl|rheMac2|chr12 (64617243-64617664) |
|
7-113, gnl|rn3|chr9 (57228787-57229107) |
| |
|
255-1296, gnl|bosTau2|chr2 (50969749-50970777) |
|
255-1296, gnl|Hg17|chr2 (201551733-201550653) |
|
255-1296, gnl|Mm7|chr1 (58672418-58671507) |
| |
|
273-513, gnl|bosTau2|chr16 (14587705-14587938) |
|
273-513, gnl|Hg17|chr5 (177978383-177978150) |
|
273-513, gnl|Mm7|chr11 (51228559-51228791) |
|
cbl (2.98473) |
|
liv (0.877706) |
|
spl (0.572738) |
|
kid (0.518941) |
|
lin (0.436808) |
|
nmm (0.398406) |
|
tra (0.369276) |
|
nep (0.36785) |
|
nco (0.323468) |
|
mga (0.32041) |
|
sme (0.305437) |
|
eje (0.296501) |
|
fat (0.294855) |
|
pty (0.285429) |
|
csk (0.281492) |
|
nca (0.273748) |
|
med (0.232504) |
|
ece (0.229305) |
|
sag (0.182715) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
ski (0.146735) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ova (0.129132) |
|
ret (0.128733) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
cbl (2.98473) |
|
liv (0.877706) |
|
spl (0.572738) |
|
kid (0.518941) |
|
lin (0.436808) |
|
nmm (0.398406) |
|
tra (0.369276) |
|
nep (0.36785) |
|
nco (0.323468) |
|
mga (0.32041) |
|
sme (0.305437) |
|
eje (0.296501) |
|
fat (0.294855) |
|
pty (0.285429) |
|
csk (0.281492) |
|
nca (0.273748) |
|
med (0.232504) |
|
ece (0.229305) |
|
sag (0.182715) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
ski (0.146735) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ova (0.129132) |
|
ret (0.128733) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
ecc (0.115035) |
|
jej (0.0989218) |
