Non-Coding RNA Search

Ss1.1-rnep34c_g23.5

Sequence:


               
               TCACCCAGCAGCCACTTCCTTACTCTAAGGCGCGGTGCAGGGCAGGTGGTCCGGCCAAAT
GGACGGTTGAGGCGGGAGCGGAGCAGCTTCGGAGACTTTCTTTAAGGCGGCAAGGCTGCG
GAGGGCGCGGGGTGGAGGGTAGGAGTACGCGGAAAGGAATAAAGAACTCACCTGGCAGCT
GAGGAACACTGCCGTTCCTAGGGCTCCTGAACTGGATCGCGCAGGCGTGGAGCGTCCGGG
CGGGGGCGGGCCCTTAAAGAGGCCGCAGCGGAGAATCCAGGAGCCCGCCGAGAATCTGGG
ATACCTGGGGGCGAGGGGCGGGTGCGGGTTGTGCGATTGCATAGATCCCCTCATATCCCT
GCCCCGGGTGGTGACGGGTATCGATCCCTAGAGGACCAGGTTCTGAGTAGAGCCGCTCTT
GGAACCCAGTCTGCGGACCGGCCCAGGGACCCCCAGTTTAAGCGCGTCTCCCCGCCTCCA
GCCCACGGCGCTATGGCTCACGTCGGCTCTCGCAAGCGCTCGAGGAGTCGCAGCCGGTCC
CGGGGCAGAGGGTCGGAAAAGAAAAGGAAGAAGAGCAGTAAGGACGCTCCCAGGAGCTGC
TCGGCTTCTAGATCCCAAAGCCGCAAAGCCAGCACTACCTCCTCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCCAGCAGCCACTTCCTTACTCTAAGGCGCGGTGCAGGGCAGGTGGTCCGGCCAAAT
GGACGGTTGAGGCGGGAGCGGAGCAGCTTCGGAGACTTTCTTTAAGGCGGCAAGGCTGCG
GAGGGCGCGGGGTGGAGGGTAGGAGTACGCGGAAAGGAATAAAGAACTCACCTGGCAGCT
GAGGAACACTGCCGTTCCTAGGGCTCCTGAACTGGATCGCGCAGGCGTGGAGCGTCCGGG
CGGGGGCGGGCCCTTAAAGAGGCCGCAGCGGAGAATCCAGGAGCCCGCCGAGAATCTGGG
ATACCTGGGGGCGAGGGGCGGGTGCGGGTTGTGCGATTGCATAGATCCCCTCATATCCCT
GCCCCGGGTGGTGACGGGTATCGATCCCTAGAGGACCAGGTTCTGAGTAGAGCCGCTCTT
GGAACCCAGTCTGCGGACCGGCCCAGGGACCCCCAGTTTAAGCGCGTCTCCCCGCCTCCA
GCCCACGGCGCTATGGCTCACGTCGGCTCTCGCAAGCGCTCGAGGAGTCGCAGCCGGTCC
CGGGGCAGAGGGTCGGAAAAGAAAAGGAAGAAGAGCAGTAAGGACGCTCCCAGGAGCTGC
TCGGCTTCTAGATCCCAAAGCCGCAAAGCCAGCACTACCTCCTCTGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               353-451, + strand, RNAz p=0.988439

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-451, + strand, RNAz p=0.988439

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-648, gnl|bosTau2|chr17 (27449857-27450525)
               

               
               1-648, gnl|Hg17|chr12 (121990107-121990719)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr17 (27449857-27450525)
               

               
               1-648, gnl|Hg17|chr12 (121990107-121990719)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               nmm (0.132802)

	1-648, gnl\|bosTau2\|chr17 (27449857-27450525)
	1-648, gnl\|Hg17\|chr12 (121990107-121990719)