Ss1.1-rnep34c_g8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGACTGAAGGCGGTCGAGGACTGGAGAACGCGCAGCCCTCCCCTGCCACTTCTCAGGT GTGTGAACCTGTAAAATTAAGCCTTTGAAGATGATCTGGTGTATTTTAGTTGCAGGGATT CTACTTCCCCAGTCCTTGGCCCATCCAGGGTTTTTTACTTCAATTGGTCAGATGACTGAT TTGATCCATACTGAAAAAGATCTGGTGACTTCCCTGAAAGATTATATTAAGGCAGAAGAG GACAAATTAGAACAAATAAAAAAATGGGCGGAGAAGTTAGATCGATTAACTAGCACAGCA ACAAAAGACCCAGAAGGATTTGTTGGACACCCTGTAAATGCATTCAAGTTAATGAAACGT CTGAACACTGAGTGGAGTGAGTTGGAGAATCTGGTCCTTAAGGATATGTCAGATGGCTTT ATCTCCAACCTGACCATTCAGAGACAGTATTTCCCTAATGATGAAGACCAGGTTGGGGCA GCCAAAGCTCTGTTGCGTCTCCAGGACACCTACAATTTGGATACAGATACCATCTCAAAG GGTGATCTTCCAGGAGTAAAACACAAATCTTTTCTAACAGTTGAGGACTGTTTTGAGTTG GGCAAAGTAGCCTATACAGAAGCAGATTATTACCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGACTGAAGGCGGTCGAGGACTGGAGAACGCGCAGCCCTCCCCTGCCACTTCTCAGGT GTGTGAACCTGTAAAATTAAGCCTTTGAAGATGATCTGGTGTATTTTAGTTGCAGGGATT CTACTTCCCCAGTCCTTGGCCCATCCAGGGTTTTTTACTTCAATTGGTCAGATGACTGAT TTGATCCATACTGAAAAAGATCTGGTGACTTCCCTGAAAGATTATATTAAGGCAGAAGAG GACAAATTAGAACAAATAAAAAAATGGGCGGAGAAGTTAGATCGATTAACTAGCACAGCA ACAAAAGACCCAGAAGGATTTGTTGGACACCCTGTAAATGCATTCAAGTTAATGAAACGT CTGAACACTGAGTGGAGTGAGTTGGAGAATCTGGTCCTTAAGGATATGTCAGATGGCTTT ATCTCCAACCTGACCATTCAGAGACAGTATTTCCCTAATGATGAAGACCAGGTTGGGGCA GCCAAAGCTCTGTTGCGTCTCCAGGACACCTACAATTTGGATACAGATACCATCTCAAAG GGTGATCTTCCAGGAGTAAAACACAAATCTTTTCTAACAGTTGAGGACTGTTTTGAGTTG GGCAAAGTAGCCTATACAGAAGCAGATTATTACCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 299-416, + strand, RNAz p=0.547485 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 299-416, + strand, RNAz p=0.547485 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 57-171, gnl|bosTau2|chr28 (22367675-22367561) | |
| 57-171, gnl|canFam2|chr4 (26873782-26873965) | |
| 57-171, gnl|danRer3|chr17 (22398276-22398097) | |
| 57-171, gnl|dasNov1|scaffold_18089 (14828-14635) | |
| 57-171, gnl|echTel1|scaffold_313968 (152580-152764) | |
| 57-171, gnl|galGal2|chr6 (10472723-10472521) | |
| 57-171, gnl|hg17|chr10 (74504549-74504737) | |
| 57-171, gnl|Hg17|chr10 (74504681-74504567) | |
| 57-171, gnl|loxAfr1|scaffold_7466 (6177-5997) | |
| 57-171, gnl|mm7|chr10 (58855363-58855228) | |
| 57-171, gnl|Mm7|chr10 (58855247-58855356) | |
| 57-171, gnl|monDom2|scaffold_14 (1126956-1127121) | |
| 57-171, gnl|oryCun1|scaffold_145162 (1066-1241) | |
| 57-171, gnl|panTro1|chr8_random (39963699-39963887) | |
| 57-171, gnl|rheMac2|chr9 (63870386-63870194) | |
| 57-171, gnl|rn3|chrUn (15109877-15110025) | |
| 57-171, gnl|xenTro1|scaffold_171 (816421-816239) | |
| 264-416, gnl|bosTau2|chr28 (22364195-22364043) | |
| 264-416, gnl|canFam2|chr4 (26871352-26871479) | |
| 264-416, gnl|danRer3|chr17 (22401180-22401041) | |
| 264-416, gnl|dasNov1|scaffold_74138 (10994-10867) | |
| 264-416, gnl|echTel1|scaffold_313968 (150032-150158) | |
| 264-416, gnl|fr1|chrUn (104231320-104231199) | |
| 264-416, gnl|galGal2|chr6 (10475430-10475303) | |
| 264-416, gnl|hg17|chr10 (74501785-74501912) | |
| 264-416, gnl|Hg17|chr10 (74501944-74501792) | |
| 264-416, gnl|loxAfr1|scaffold_7466 (9577-9450) | |
| 264-416, gnl|mm7|chr10 (58861040-58860913) | |
| 264-416, gnl|Mm7|chr10 (58860879-58861031) | |
| 264-416, gnl|monDom2|scaffold_14 (1123220-1123347) | |
| 264-416, gnl|panTro1|chr8_random (39958470-39958599) | |
| 264-416, gnl|rheMac2|chr9 (63873486-63873359) | |
| 264-416, gnl|rn3|chrUn (15104607-15104734) | |
| 264-416, gnl|tetNig1|chrUn_random (9711449-9711328) | |
| 264-416, gnl|xenTro1|scaffold_171 (818144-818012) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 57-171, gnl|bosTau2|chr28 (22367675-22367561) | |
| 57-171, gnl|canFam2|chr4 (26873782-26873965) | |
| 57-171, gnl|danRer3|chr17 (22398276-22398097) | |
| 57-171, gnl|dasNov1|scaffold_18089 (14828-14635) | |
| 57-171, gnl|echTel1|scaffold_313968 (152580-152764) | |
| 57-171, gnl|galGal2|chr6 (10472723-10472521) | |
| 57-171, gnl|hg17|chr10 (74504549-74504737) | |
| 57-171, gnl|Hg17|chr10 (74504681-74504567) | |
| 57-171, gnl|loxAfr1|scaffold_7466 (6177-5997) | |
| 57-171, gnl|mm7|chr10 (58855363-58855228) | |
| 57-171, gnl|Mm7|chr10 (58855247-58855356) | |
| 57-171, gnl|monDom2|scaffold_14 (1126956-1127121) | |
| 57-171, gnl|oryCun1|scaffold_145162 (1066-1241) | |
| 57-171, gnl|panTro1|chr8_random (39963699-39963887) | |
| 57-171, gnl|rheMac2|chr9 (63870386-63870194) | |
| 57-171, gnl|rn3|chrUn (15109877-15110025) | |
| 57-171, gnl|xenTro1|scaffold_171 (816421-816239) | |
| 264-416, gnl|bosTau2|chr28 (22364195-22364043) | |
| 264-416, gnl|canFam2|chr4 (26871352-26871479) | |
| 264-416, gnl|danRer3|chr17 (22401180-22401041) | |
| 264-416, gnl|dasNov1|scaffold_74138 (10994-10867) | |
| 264-416, gnl|echTel1|scaffold_313968 (150032-150158) | |
| 264-416, gnl|fr1|chrUn (104231320-104231199) | |
| 264-416, gnl|galGal2|chr6 (10475430-10475303) | |
| 264-416, gnl|hg17|chr10 (74501785-74501912) | |
| 264-416, gnl|Hg17|chr10 (74501944-74501792) | |
| 264-416, gnl|loxAfr1|scaffold_7466 (9577-9450) | |
| 264-416, gnl|mm7|chr10 (58861040-58860913) | |
| 264-416, gnl|Mm7|chr10 (58860879-58861031) | |
| 264-416, gnl|monDom2|scaffold_14 (1123220-1123347) | |
| 264-416, gnl|panTro1|chr8_random (39958470-39958599) | |
| 264-416, gnl|rheMac2|chr9 (63873486-63873359) | |
| 264-416, gnl|rn3|chrUn (15104607-15104734) | |
| 264-416, gnl|tetNig1|chrUn_random (9711449-9711328) | |
| 264-416, gnl|xenTro1|scaffold_171 (818144-818012) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nca (0.273748) | |
| nep (0.183925) | |
| nco (0.161734) | |
| spl (0.143184) | |
| cst (0.140036) | |
| cbl (0.114797) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.273748) | |
| nep (0.183925) | |
| nco (0.161734) | |
| spl (0.143184) | |
| cst (0.140036) | |
| cbl (0.114797) |