Non-Coding RNA Search

Ss1.1-rnep34c_m9.5

Sequence:


               
               TGAAATATCGAAAAGTCTAGGTTCCGTCTTAGAGGCTGAGTGTTGGGTGAAGAGCTTCCA
TTCTTGCTGGTGACATCTTCACACTTGGCTATACTCTGGTGGCTTGGATGCTGGAAAACT
TTTCAGGTCAACAGAAGCTAAAACTAGATCGTGAAGCATGGAAGAAGAGGCTGTGGACAG
TTCATAAAGATAAGGTCCATAATATGTTGGTAATTTTCAACCTTGCATGAAAATCAGAAA
TAGTATATCCAAAGCAATTTACTGGTCAGCAGGTGAGTCTGCAGCATTTCTGTGTCCACA
GTGGAGAGTCAAGATATTCATTGCAGAGTGGAATCAAAGAGAACTCAAAAACCAAAACGG
AAGTCTAAGAATTTGTTAGTGTTCCTTAGGTGGTTAAGGGGATAAATTGTTCAGAGATAC
TGCATCCTGGGCAACTGAAAATGAGCAACCTGGTTTTTAGCAGGTGGGTTCACAGCAGGT
GGGCTCACAGCAGGTGGGCTCAGAGCACTGGCAGCAGCAGGCTGGCAGGCAGCAGGACTG
CCCACAATAGGAGGGGCGGCAGCAGGACGCCTGGGCGTGGTGCAGCTGGCAGCAGGTGGG
GGGCGTGCAGCTCACCACGCAGCAAGGTGGCAGGACGGTGCCCTCCACGCGGCAGTCAGG
GCGGCACCACCTGGTGCGGTAGCTCCGAGCTCCACTGCTACCCTCCTGGCCACCGCCAAT
GCCACTGCCAATGCCACTGCCGATCTCACAGCCACTGGTCTGGCAGCAGCTGGTCTGGAC
ACAGGTTGGCTGGCAGCAGCTGGTCTGGACGCAGGGTGGCTGGCAGCAGCTGGTCTGGAC
GCAGGGTGGCTGGCAGCAACTGGTCTGGACGCAGGGTGGCTGGCAGCAGCTAGTCTGGGA
GCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACCGGTGGAGCAGATGGGAAATCC
ACAGAAGCTCGTGGAACAGCACATGGTGTCAGGAGCTGGGCTGAGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAATATCGAAAAGTCTAGGTTCCGTCTTAGAGGCTGAGTGTTGGGTGAAGAGCTTCCA
TTCTTGCTGGTGACATCTTCACACTTGGCTATACTCTGGTGGCTTGGATGCTGGAAAACT
TTTCAGGTCAACAGAAGCTAAAACTAGATCGTGAAGCATGGAAGAAGAGGCTGTGGACAG
TTCATAAAGATAAGGTCCATAATATGTTGGTAATTTTCAACCTTGCATGAAAATCAGAAA
TAGTATATCCAAAGCAATTTACTGGTCAGCAGGTGAGTCTGCAGCATTTCTGTGTCCACA
GTGGAGAGTCAAGATATTCATTGCAGAGTGGAATCAAAGAGAACTCAAAAACCAAAACGG
AAGTCTAAGAATTTGTTAGTGTTCCTTAGGTGGTTAAGGGGATAAATTGTTCAGAGATAC
TGCATCCTGGGCAACTGAAAATGAGCAACCTGGTTTTTAGCAGGTGGGTTCACAGCAGGT
GGGCTCACAGCAGGTGGGCTCAGAGCACTGGCAGCAGCAGGCTGGCAGGCAGCAGGACTG
CCCACAATAGGAGGGGCGGCAGCAGGACGCCTGGGCGTGGTGCAGCTGGCAGCAGGTGGG
GGGCGTGCAGCTCACCACGCAGCAAGGTGGCAGGACGGTGCCCTCCACGCGGCAGTCAGG
GCGGCACCACCTGGTGCGGTAGCTCCGAGCTCCACTGCTACCCTCCTGGCCACCGCCAAT
GCCACTGCCAATGCCACTGCCGATCTCACAGCCACTGGTCTGGCAGCAGCTGGTCTGGAC
ACAGGTTGGCTGGCAGCAGCTGGTCTGGACGCAGGGTGGCTGGCAGCAGCTGGTCTGGAC
GCAGGGTGGCTGGCAGCAACTGGTCTGGACGCAGGGTGGCTGGCAGCAGCTAGTCTGGGA
GCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACCGGTGGAGCAGATGGGAAATCC
ACAGAAGCTCGTGGAACAGCACATGGTGTCAGGAGCTGGGCTGAGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q29619_SHEEP

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29619_SHEEP

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               400-553, - strand, RNAz p=0.919289
               

               
               674-818, - strand, RNAz p=0.86423

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-553, - strand, RNAz p=0.919289
               

               
               674-818, - strand, RNAz p=0.86423

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-833, gnl|bosTau2|chr19 (33647482-33646631)
               

               
               1-833, gnl|Hg17|chr17 (36435926-36436869)
               

               
               1-833, gnl|Mm7|chr11 (99689139-99689940)
               


               
               854-1007, gnl|bosTau2|chr19 (33631379-33631223)
               

               
               854-1007, gnl|Hg17|chr17 (36450904-36451198)
               

               
               854-1007, gnl|Mm7|chr11 (99706969-99707115)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-833, gnl|bosTau2|chr19 (33647482-33646631)
               

               
               1-833, gnl|Hg17|chr17 (36435926-36436869)
               

               
               1-833, gnl|Mm7|chr11 (99689139-99689940)
               


               
               854-1007, gnl|bosTau2|chr19 (33631379-33631223)
               

               
               854-1007, gnl|Hg17|chr17 (36450904-36451198)
               

               
               854-1007, gnl|Mm7|chr11 (99706969-99707115)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (1.10355)
               

               
               ski (0.29347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (1.10355)
               

               
               ski (0.29347)

	400-553, - strand, RNAz p=0.919289
	674-818, - strand, RNAz p=0.86423

	1-833, gnl\|bosTau2\|chr19 (33647482-33646631)
	1-833, gnl\|Hg17\|chr17 (36435926-36436869)
	1-833, gnl\|Mm7\|chr11 (99689139-99689940)

	854-1007, gnl\|bosTau2\|chr19 (33631379-33631223)
	854-1007, gnl\|Hg17\|chr17 (36450904-36451198)
	854-1007, gnl\|Mm7\|chr11 (99706969-99707115)