Non-Coding RNA Search

Ss1.1-rnep34c_o3.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATGGAGAAACAT
GATTTATTTGGCCCAGGTGGGGTATGGCTTCCTGCTGGAGACAAGGAAGGACCCTGGGAC
CCAGGGCTTCCCAGAAGGGATGAACCAGTTCAGGGAAGGATCCAGATCATCCTGTCTCAT
TCCACCCGAGTTCAGAGGGTTGGTTGATGTTGCTTTTCATTTGCCACGTGCAGAACCTGG
AGGCCCACGGAGGACCAGCTCCCGGAGGGGCACAGGTGAAAACCGCCTGTGCTGGGAGCA
GCTGGGAGGAGGCTTGTGGTCAAAAGCAGGAAGGGGTGCTACAGGAGAGGGGTCTGCAGA
CCAGGCTGGGGCGGAGGGGCTGGCAGAACCCAGAGGACTGGCAGGACGGGGCCACCCACA
CGACCGGCTTGCAGCTCACAGGCAGGCACCCAGAGGACTGGCAGGAGGGGGCCACGCACA
CAGCCGGCCTGCAGCTCACGGGAACACATACAACTTTCCTGTAGCTCACGGGCACACAGG
ATGCCTGGCAGGAGCTGGATGTGCAGGAGGATGGCTGGCAGGAGCTGGGCACATAGCAGG
CAGTCTGGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATGGAGAAACAT
GATTTATTTGGCCCAGGTGGGGTATGGCTTCCTGCTGGAGACAAGGAAGGACCCTGGGAC
CCAGGGCTTCCCAGAAGGGATGAACCAGTTCAGGGAAGGATCCAGATCATCCTGTCTCAT
TCCACCCGAGTTCAGAGGGTTGGTTGATGTTGCTTTTCATTTGCCACGTGCAGAACCTGG
AGGCCCACGGAGGACCAGCTCCCGGAGGGGCACAGGTGAAAACCGCCTGTGCTGGGAGCA
GCTGGGAGGAGGCTTGTGGTCAAAAGCAGGAAGGGGTGCTACAGGAGAGGGGTCTGCAGA
CCAGGCTGGGGCGGAGGGGCTGGCAGAACCCAGAGGACTGGCAGGACGGGGCCACCCACA
CGACCGGCTTGCAGCTCACAGGCAGGCACCCAGAGGACTGGCAGGAGGGGGCCACGCACA
CAGCCGGCCTGCAGCTCACGGGAACACATACAACTTTCCTGTAGCTCACGGGCACACAGG
ATGCCTGGCAGGAGCTGGATGTGCAGGAGGATGGCTGGCAGGAGCTGGGCACATAGCAGG
CAGTCTGGCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877131|ref|XP_584994.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877131|ref|XP_584994.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               46-150, - strand, RNAz p=0.519371
               

               
               260-378, + strand, RNAz p=0.901982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-150, - strand, RNAz p=0.519371
               

               
               260-378, + strand, RNAz p=0.901982

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-611, gnl|bosTau2|chr1 (91970371-91969799)
               

               
               46-611, gnl|Hg17|chr21 (44902880-44902350)
               

               
               46-611, gnl|Mm7|chr10 (77389247-77389793)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-611, gnl|bosTau2|chr1 (91970371-91969799)
               

               
               46-611, gnl|Hg17|chr21 (44902880-44902350)
               

               
               46-611, gnl|Mm7|chr10 (77389247-77389793)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (1.65532)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (1.65532)

	46-150, - strand, RNAz p=0.519371
	260-378, + strand, RNAz p=0.901982

	46-611, gnl\|bosTau2\|chr1 (91970371-91969799)
	46-611, gnl\|Hg17\|chr21 (44902880-44902350)
	46-611, gnl\|Mm7\|chr10 (77389247-77389793)