Non-Coding RNA Search

Ss1.1-rnep35c_g11.5.5

Sequence:


               
               GCTCTGTCCTCAGCCAGACGCAGCCCCGGTTCCGCGCTGGTCCCAGCTCCGACGTGCGCC
CTCGGGAGGCTTGGTTGGCAGCGAGCTCAGAAGCTCCGTGGCAGGTGCAGGCGACATGGC
CGAGCAGCTGTCCAAAGAGCAGGTGGCCAAGTTCAAGGAGGCCTTCGACAGAATCGACAA
GAACAAGGATGGCACCATCAACGTGCAGGAGCTGGGCGCCGTGATGCGGTCCCTGGGCCA
TAACCCGTCAGAGGCCGAGCTCAAGGAGCTCATCGCCAGAGTGGACAAGGACGGGGACGG
CAGCATCAGCTTCGAGGAGTTCCTGGCCGCCATGGTCACGGTGATGCAGGCCCACGGCAG
CCAGGGCGGCCTGCGGGAGACCTTCCGCGCCTTCGACCTGGACGGCGACGGCCACATCAG
CGTGGACGAGCTCAGACAGACCATGGCCAAGCTGGGGGAGACGCTGTCCCCGGAGGAGCT
GGACATGATGATCCGCGAGGCCGACGTGGACCAGGACGGGCGGGTCAACTACGAGGAGTT
CCTGCGTGTCCTCGCCCAGAAGTGAGGCCCCTCTGCCCCTCGTCGGCCCCGCGTCCTCGA
GGGGACGCAGAGGGACAGTCTGGGCGGTGGGGAGGCCTGGCCTCTCCTGGGCCGGGTTCT
GCTCTCTGCCCAGCGCGACCGCGTGTGCTCCTGGGCTGGGGTGCTCCCTACCTCACAGGG
CTGTTGTGAGGCACCCCGAAGCCGCAGGGTGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTGTCCTCAGCCAGACGCAGCCCCGGTTCCGCGCTGGTCCCAGCTCCGACGTGCGCC
CTCGGGAGGCTTGGTTGGCAGCGAGCTCAGAAGCTCCGTGGCAGGTGCAGGCGACATGGC
CGAGCAGCTGTCCAAAGAGCAGGTGGCCAAGTTCAAGGAGGCCTTCGACAGAATCGACAA
GAACAAGGATGGCACCATCAACGTGCAGGAGCTGGGCGCCGTGATGCGGTCCCTGGGCCA
TAACCCGTCAGAGGCCGAGCTCAAGGAGCTCATCGCCAGAGTGGACAAGGACGGGGACGG
CAGCATCAGCTTCGAGGAGTTCCTGGCCGCCATGGTCACGGTGATGCAGGCCCACGGCAG
CCAGGGCGGCCTGCGGGAGACCTTCCGCGCCTTCGACCTGGACGGCGACGGCCACATCAG
CGTGGACGAGCTCAGACAGACCATGGCCAAGCTGGGGGAGACGCTGTCCCCGGAGGAGCT
GGACATGATGATCCGCGAGGCCGACGTGGACCAGGACGGGCGGGTCAACTACGAGGAGTT
CCTGCGTGTCCTCGCCCAGAAGTGAGGCCCCTCTGCCCCTCGTCGGCCCCGCGTCCTCGA
GGGGACGCAGAGGGACAGTCTGGGCGGTGGGGAGGCCTGGCCTCTCCTGGGCCGGGTTCT
GCTCTCTGCCCAGCGCGACCGCGTGTGCTCCTGGGCTGGGGTGCTCCCTACCTCACAGGG
CTGTTGTGAGGCACCCCGAAGCCGCAGGGTGGGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61831166|ref|XP_598645.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831166|ref|XP_598645.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-592, gnl|bosTau2|chr13 (29058238-29057653)
               

               
               1-592, gnl|Hg17|chr10 (5531530-5530945)
               

               
               1-592, gnl|Mm7|chr13 (3738511-3739054)
               


               
               345-534, gnl|bosTau2|chr10 (69307124-69306938)
               

               
               345-534, gnl|Hg17|chr14 (89940426-89940609)
               

               
               345-534, gnl|Mm7|chr12 (97701409-97701583)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-592, gnl|bosTau2|chr13 (29058238-29057653)
               

               
               1-592, gnl|Hg17|chr10 (5531530-5530945)
               

               
               1-592, gnl|Mm7|chr13 (3738511-3739054)
               


               
               345-534, gnl|bosTau2|chr10 (69307124-69306938)
               

               
               345-534, gnl|Hg17|chr14 (89940426-89940609)
               

               
               345-534, gnl|Mm7|chr12 (97701409-97701583)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nep (1.83925)
               

               
               fli (0.202881)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (1.83925)
               

               
               fli (0.202881)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

	1-592, gnl\|bosTau2\|chr13 (29058238-29057653)
	1-592, gnl\|Hg17\|chr10 (5531530-5530945)
	1-592, gnl\|Mm7\|chr13 (3738511-3739054)

	345-534, gnl\|bosTau2\|chr10 (69307124-69306938)
	345-534, gnl\|Hg17\|chr14 (89940426-89940609)
	345-534, gnl\|Mm7\|chr12 (97701409-97701583)