Non-Coding RNA Search

Ss1.1-rnep35c_n9.5.5

Sequence:


               
               CACAGAGCAGGGCCTGCTGCTTCGCACCCTGCAGCTTGGTGATCGCGGCCTCTACTCCTG
TACAGCCACTGAGAACAACTTCAAGCACGTCATCACACGGGTGCAGCTGCATGTACTGGG
CCGGGACGCCGTCCATGCTGCCCTCTTCCCGCCGCCAGCTGTGAGCGTCCCACCACCCCC
AGGCGCCGGCCTCCCCACGCCCCCTTACCAGGAGCTGGCCCAGCTGCTAGCCCAGCCGGA
AGTGGGCCTCATCCACCAGTACTGCCAGGGCTACTGGCGCCATGTGCCCCCCAGCCCCAG
GGGGAGGCCTGGGGCCTGCAGGGGCTCCCTGGGGCTCTCTTCTGCCCACCACTTCAGATG
ATGGGTGTAAATAGCTCTGGGGGGGCAGTTTGGTAGGTGGGTGAGGTCTCCTGGCAGCCC
TCTGCTGCCCAGGCCTGCCACACCTGCCCTTGGGTTCCATCTTGCTAATAAACACTGGCT
CTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGAGCAGGGCCTGCTGCTTCGCACCCTGCAGCTTGGTGATCGCGGCCTCTACTCCTG
TACAGCCACTGAGAACAACTTCAAGCACGTCATCACACGGGTGCAGCTGCATGTACTGGG
CCGGGACGCCGTCCATGCTGCCCTCTTCCCGCCGCCAGCTGTGAGCGTCCCACCACCCCC
AGGCGCCGGCCTCCCCACGCCCCCTTACCAGGAGCTGGCCCAGCTGCTAGCCCAGCCGGA
AGTGGGCCTCATCCACCAGTACTGCCAGGGCTACTGGCGCCATGTGCCCCCCAGCCCCAG
GGGGAGGCCTGGGGCCTGCAGGGGCTCCCTGGGGCTCTCTTCTGCCCACCACTTCAGATG
ATGGGTGTAAATAGCTCTGGGGGGGCAGTTTGGTAGGTGGGTGAGGTCTCCTGGCAGCCC
TCTGCTGCCCAGGCCTGCCACACCTGCCCTTGGGTTCCATCTTGCTAATAAACACTGGCT
CTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|995786|gb|AAB06011.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|995786|gb|AAB06011.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               304-410, + strand, RNAz p=0.893606

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               304-410, + strand, RNAz p=0.893606

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_004186, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004186, +

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               1-204, gnl|bosTau2|chr22 (38436587-38436787)
               

               
               1-204, gnl|canFam2|chr20 (42136925-42136659)
               

               
               1-204, gnl|danRer3|chr11 (41467912-41468181)
               

               
               1-204, gnl|dasNov1|scaffold_34368 (42640-42380)
               

               
               1-204, gnl|echTel1|scaffold_314205 (7601-7338)
               

               
               1-204, gnl|fr1|chrUn (102492973-102493242)
               

               
               1-204, gnl|hg17|chr3 (50200141-50200404)
               

               
               1-204, gnl|Hg17|chr3 (50200168-50200347)
               

               
               1-204, gnl|loxAfr1|scaffold_37622 (12195-11954)
               

               
               1-204, gnl|mm7|chr9 (107412289-107412026)
               

               
               1-204, gnl|Mm7|chr9 (107412260-107412081)
               

               
               1-204, gnl|monDom2|scaffold_5 (74313862-74313575)
               

               
               1-204, gnl|oryCun1|scaffold_210732 (68822-68559)
               

               
               1-204, gnl|panTro1|chr2 (51780026-51780289)
               

               
               1-204, gnl|rheMac2|chr2 (86233539-86233276)
               

               
               1-204, gnl|rn3|chr8 (112952905-112952642)
               

               
               1-204, gnl|tetNig1|chr11 (4632067-4631798)
               

               
               1-204, gnl|xenTro1|scaffold_189 (475351-475611)
               


               
               304-486, gnl|bosTau2|chr22 (38437742-38437918)
               

               
               304-486, gnl|Hg17|chr3 (50201324-50201507)
               

               
               304-486, gnl|Mm7|chr9 (107411132-107410951)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-204, gnl|bosTau2|chr22 (38436587-38436787)
               

               
               1-204, gnl|canFam2|chr20 (42136925-42136659)
               

               
               1-204, gnl|danRer3|chr11 (41467912-41468181)
               

               
               1-204, gnl|dasNov1|scaffold_34368 (42640-42380)
               

               
               1-204, gnl|echTel1|scaffold_314205 (7601-7338)
               

               
               1-204, gnl|fr1|chrUn (102492973-102493242)
               

               
               1-204, gnl|hg17|chr3 (50200141-50200404)
               

               
               1-204, gnl|Hg17|chr3 (50200168-50200347)
               

               
               1-204, gnl|loxAfr1|scaffold_37622 (12195-11954)
               

               
               1-204, gnl|mm7|chr9 (107412289-107412026)
               

               
               1-204, gnl|Mm7|chr9 (107412260-107412081)
               

               
               1-204, gnl|monDom2|scaffold_5 (74313862-74313575)
               

               
               1-204, gnl|oryCun1|scaffold_210732 (68822-68559)
               

               
               1-204, gnl|panTro1|chr2 (51780026-51780289)
               

               
               1-204, gnl|rheMac2|chr2 (86233539-86233276)
               

               
               1-204, gnl|rn3|chr8 (112952905-112952642)
               

               
               1-204, gnl|tetNig1|chr11 (4632067-4631798)
               

               
               1-204, gnl|xenTro1|scaffold_189 (475351-475611)
               


               
               304-486, gnl|bosTau2|chr22 (38437742-38437918)
               

               
               304-486, gnl|Hg17|chr3 (50201324-50201507)
               

               
               304-486, gnl|Mm7|chr9 (107411132-107410951)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ton (0.351)
               

               
               cga (0.279096)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)
               

               
               cga (0.279096)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)

	1-204, gnl\|bosTau2\|chr22 (38436587-38436787)
	1-204, gnl\|canFam2\|chr20 (42136925-42136659)
	1-204, gnl\|danRer3\|chr11 (41467912-41468181)
	1-204, gnl\|dasNov1\|scaffold_34368 (42640-42380)
	1-204, gnl\|echTel1\|scaffold_314205 (7601-7338)
	1-204, gnl\|fr1\|chrUn (102492973-102493242)
	1-204, gnl\|hg17\|chr3 (50200141-50200404)
	1-204, gnl\|Hg17\|chr3 (50200168-50200347)
	1-204, gnl\|loxAfr1\|scaffold_37622 (12195-11954)
	1-204, gnl\|mm7\|chr9 (107412289-107412026)
	1-204, gnl\|Mm7\|chr9 (107412260-107412081)
	1-204, gnl\|monDom2\|scaffold_5 (74313862-74313575)
	1-204, gnl\|oryCun1\|scaffold_210732 (68822-68559)
	1-204, gnl\|panTro1\|chr2 (51780026-51780289)
	1-204, gnl\|rheMac2\|chr2 (86233539-86233276)
	1-204, gnl\|rn3\|chr8 (112952905-112952642)
	1-204, gnl\|tetNig1\|chr11 (4632067-4631798)
	1-204, gnl\|xenTro1\|scaffold_189 (475351-475611)

	304-486, gnl\|bosTau2\|chr22 (38437742-38437918)
	304-486, gnl\|Hg17\|chr3 (50201324-50201507)
	304-486, gnl\|Mm7\|chr9 (107411132-107410951)

	ton (0.351)
	cga (0.279096)
	nep (0.183925)
	mcp (0.170648)
	cag (0.151194)