Non-Coding RNA Search

Ss1.1-rnje03c_m12.5

Sequence:


               
               ACATCCTGCTCCAGAGGCATAGGAAGAGAACATTGTACATGTGCAACTCCCACCTAATGT
GTCACTCCTGCCAAATGCAGAGGGTAGCAGAAGCTCCAGAGCCCATACCTGCAGGACTCA
GGCAAACCTCTCTGCTGGCCACCTTGAAAAGGCTGTAGCACCTGCCCCTGAGAGAAGGAA
CACTGGAATCTACAGACCAGTTTTCCAGGCCTCCCCGTTTTCCCTTTGCCATACCTGCAG
GCCTTAAGAAAACTGAAAATAACTGTCAGCTTGAGGACGTGGACCCTGGAGTGTGAGTGC
CACACTGCACCCTGAGGGCTACCGGCCCAGCGCTCACCATGTTTGCTGCATCAGAGGCAG
GAGTGGGCAGGCCTTACACGTGCAGTGAATGTGGCAAGAGCTTCCGCTACAGTTCAGTGC
TGCTACGGCATGAGCGCGCCCATGGCAGTGATAGCCATTTGCGCTGTCTAGAGTGTGGTG
AGCATTGTGCACAGGCTGCAGACCTCCGTTCACACCGACGTGTCCATGCCGGCCAGACCC
TCTATATCTGCAGCGAATGTGGCCAGAGCTTCCGCCACAGCGGCCGCCTTGACCTGCACC
AGAGTGTGCACAGGCGGCGTGGCCGCTCCTGCCGCTGCCGCACTTGTGGCCGTTGCTTCC
CACACCTCCCGGCCCTACTACTGCACAGGCGTCACTGGCACCCTCCCGAGCGGCCCTGCC
GCTGTCCTCTGTGCCCTCGCGCCTTCCGGCAGAGCGCCCTGCGTTTCCACCAAGCACGGG
CGCATCCCTGGGGGATACCAGCTGTGCCCACTGACACGCTCCACCACTGTACACAGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATCCTGCTCCAGAGGCATAGGAAGAGAACATTGTACATGTGCAACTCCCACCTAATGT
GTCACTCCTGCCAAATGCAGAGGGTAGCAGAAGCTCCAGAGCCCATACCTGCAGGACTCA
GGCAAACCTCTCTGCTGGCCACCTTGAAAAGGCTGTAGCACCTGCCCCTGAGAGAAGGAA
CACTGGAATCTACAGACCAGTTTTCCAGGCCTCCCCGTTTTCCCTTTGCCATACCTGCAG
GCCTTAAGAAAACTGAAAATAACTGTCAGCTTGAGGACGTGGACCCTGGAGTGTGAGTGC
CACACTGCACCCTGAGGGCTACCGGCCCAGCGCTCACCATGTTTGCTGCATCAGAGGCAG
GAGTGGGCAGGCCTTACACGTGCAGTGAATGTGGCAAGAGCTTCCGCTACAGTTCAGTGC
TGCTACGGCATGAGCGCGCCCATGGCAGTGATAGCCATTTGCGCTGTCTAGAGTGTGGTG
AGCATTGTGCACAGGCTGCAGACCTCCGTTCACACCGACGTGTCCATGCCGGCCAGACCC
TCTATATCTGCAGCGAATGTGGCCAGAGCTTCCGCCACAGCGGCCGCCTTGACCTGCACC
AGAGTGTGCACAGGCGGCGTGGCCGCTCCTGCCGCTGCCGCACTTGTGGCCGTTGCTTCC
CACACCTCCCGGCCCTACTACTGCACAGGCGTCACTGGCACCCTCCCGAGCGGCCCTGCC
GCTGTCCTCTGTGCCCTCGCGCCTTCCGGCAGAGCGCCCTGCGTTTCCACCAAGCACGGG
CGCATCCCTGGGGGATACCAGCTGTGCCCACTGACACGCTCCACCACTGTACACAGTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96H65_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96H65_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               731-840, - strand, RNAz p=0.805841

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               731-840, - strand, RNAz p=0.805841

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               121-840, gnl|bosTau2|chr7 (28845613-28846327)
               

               
               121-840, gnl|Hg17|chr1 (245351015-245351729)
               

               
               121-840, gnl|Mm7|chr11 (58399196-58398522)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-840, gnl|bosTau2|chr7 (28845613-28846327)
               

               
               121-840, gnl|Hg17|chr1 (245351015-245351729)
               

               
               121-840, gnl|Mm7|chr11 (58399196-58398522)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.33184)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               ret (0.128733)

	121-840, gnl\|bosTau2\|chr7 (28845613-28846327)
	121-840, gnl\|Hg17\|chr1 (245351015-245351729)
	121-840, gnl\|Mm7\|chr11 (58399196-58398522)