Ss1.1-rnje04c_a18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAACTGGGAGCTGATAAGGAGGTCTGGGTGTGGGTGATGGGCGAGCACCATCTTGATAA GCCCTACGATGTGCTCTGCGAGGAGATTCTCGCCGAGCGGGCGCGGCTGAAAGCAGAGCA GGAGGCCGCAGAGCTCATAACATCTCAGTCCAGATAATCTACCGGCAGCTTGAAAACAAA GTCACAGGCCTTTGATGTGCAAGCCCCAGGTGACAAGGAGAGTCGGGTGGGCAAGAAGGC GGCAGAGGAGGGGGGACAGGGGCAAGGCTGTGGGCCAGCTCCATCCCCCGAAGAGCAGAA AACTCCTTCACCCTCCAGTTCCTCAAGAAATATTCAACAAATGTTGGCAGATTCCATCAG TCGGATGAAGGAATATGGATTTCTCCAGAAGAAAGAGTCCATGAAGAAAACACAAGATGA AGAAATAAAACAAATAGATGAAGAGAGAACTAAGCAGATTTACAAGAACTGGAAGGAAGA TTCGGAGTGGCAGGCCTCTTTGCGAAAATCCAAAGCAGCTGATGAGAGGAGGCGCTCCCT GGCCAAACAGGCGAGGGAAGACTACAAGAGGCTGTCCCAAAGAGGGAGAGGCAGCGAGGG GCCGCAGAGCCCCCCAGGAGGCCCCCAGAAACCCAGGAGGCCCCCGCTTCCACCCAAGCC TCAGTTCCTGAGCCCAACCGGACAACCCCACAGACCCCTCAGAAACCAGGGAGTGATGAG GACGGAGTCCAGCTCTGCCCAGGAGGACATCGTGCGCTGGTTCCGGGAGGAACAGCTGCC CCTGCGGGCAGGCTACCTGGCGACCTCAGACAGCATCGCTCCCTGGTTCCACGGAATTCT CACGCTAAAGAGAGCAAATGAGCTGCTAAGCACATGCCAGCCGGGCAGCTTTCTGATCCG GGTCAGTGAGAGGATCAAGGGCTACGCCCTGTCCTATCGGTTGGAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAACTGGGAGCTGATAAGGAGGTCTGGGTGTGGGTGATGGGCGAGCACCATCTTGATAA GCCCTACGATGTGCTCTGCGAGGAGATTCTCGCCGAGCGGGCGCGGCTGAAAGCAGAGCA GGAGGCCGCAGAGCTCATAACATCTCAGTCCAGATAATCTACCGGCAGCTTGAAAACAAA GTCACAGGCCTTTGATGTGCAAGCCCCAGGTGACAAGGAGAGTCGGGTGGGCAAGAAGGC GGCAGAGGAGGGGGGACAGGGGCAAGGCTGTGGGCCAGCTCCATCCCCCGAAGAGCAGAA AACTCCTTCACCCTCCAGTTCCTCAAGAAATATTCAACAAATGTTGGCAGATTCCATCAG TCGGATGAAGGAATATGGATTTCTCCAGAAGAAAGAGTCCATGAAGAAAACACAAGATGA AGAAATAAAACAAATAGATGAAGAGAGAACTAAGCAGATTTACAAGAACTGGAAGGAAGA TTCGGAGTGGCAGGCCTCTTTGCGAAAATCCAAAGCAGCTGATGAGAGGAGGCGCTCCCT GGCCAAACAGGCGAGGGAAGACTACAAGAGGCTGTCCCAAAGAGGGAGAGGCAGCGAGGG GCCGCAGAGCCCCCCAGGAGGCCCCCAGAAACCCAGGAGGCCCCCGCTTCCACCCAAGCC TCAGTTCCTGAGCCCAACCGGACAACCCCACAGACCCCTCAGAAACCAGGGAGTGATGAG GACGGAGTCCAGCTCTGCCCAGGAGGACATCGTGCGCTGGTTCCGGGAGGAACAGCTGCC CCTGCGGGCAGGCTACCTGGCGACCTCAGACAGCATCGCTCCCTGGTTCCACGGAATTCT CACGCTAAAGAGAGCAAATGAGCTGCTAAGCACATGCCAGCCGGGCAGCTTTCTGATCCG GGTCAGTGAGAGGATCAAGGGCTACGCCCTGTCCTATCGGTTGGAGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-137, gnl|bosTau2|chr27 (25109625-25109489) | |
| 1-137, gnl|Hg17|chr8 (19234768-19234904) | |
| 1-137, gnl|Mm7|chr8 (66748823-66748956) | |
| 386-500, gnl|bosTau2|chr27 (25084586-25084472) | |
| 386-500, gnl|canFam2|chr16 (25134349-25134477) | |
| 386-500, gnl|dasNov1|scaffold_84388 (617-500) | |
| 386-500, gnl|echTel1|scaffold_306380 (30317-30437) | |
| 386-500, gnl|hg17|chr8 (19262969-19263106) | |
| 386-500, gnl|Hg17|chr8 (19262991-19263105) | |
| 386-500, gnl|loxAfr1|scaffold_7264 (114773-114893) | |
| 386-500, gnl|mm7|chr8 (66783734-66783859) | |
| 386-500, gnl|Mm7|chr8 (66783747-66783858) | |
| 386-500, gnl|monDom2|scaffold_1 (78085445-78085603) | |
| 386-500, gnl|oryCun1|scaffold_179329 (62107-62233) | |
| 386-500, gnl|panTro1|chr7 (20129423-20129560) | |
| 386-500, gnl|rheMac2|chr8 (19262601-19262729) | |
| 386-500, gnl|rn3|chr16 (22978530-22978402) | |
| 501-702, gnl|bosTau2|chr27 (25083006-25082805) | |
| 501-702, gnl|canFam2|chr16 (25136083-25136371) | |
| 501-702, gnl|dasNov1|scaffold_51618 (3383-3068) | |
| 501-702, gnl|echTel1|scaffold_306380 (32335-32648) | |
| 501-702, gnl|hg17|chr8 (19265771-19266091) | |
| 501-702, gnl|Hg17|chr8 (19265863-19266073) | |
| 501-702, gnl|loxAfr1|scaffold_90234 (235-548) | |
| 501-702, gnl|mm7|chr8 (66785427-66785752) | |
| 501-702, gnl|Mm7|chr8 (66785533-66785734) | |
| 501-702, gnl|monDom2|scaffold_1 (78087813-78088135) | |
| 501-702, gnl|oryCun1|scaffold_179329 (65657-65969) | |
| 501-702, gnl|panTro1|chr7 (20132217-20132537) | |
| 501-702, gnl|rheMac2|chr8 (19265363-19265679) | |
| 501-702, gnl|rn3|chr16 (22976764-22976439) | |
| 833-948, gnl|bosTau2|chr27 (25065630-25065515) | |
| 833-948, gnl|canFam2|chr16 (25162163-25162437) | |
| 833-948, gnl|danRer3|chrUn (121014886-121014615) | |
| 833-948, gnl|dasNov1|scaffold_140969 (2046-1773) | |
| 833-948, gnl|echTel1|scaffold_315225 (41082-40805) | |
| 833-948, gnl|galGal2|chr4 (34553491-34553747) | |
| 833-948, gnl|hg17|chr8 (19295064-19295345) | |
| 833-948, gnl|Hg17|chr8 (19295108-19295226) | |
| 833-948, gnl|loxAfr1|scaffold_24297 (38954-39227) | |
| 833-948, gnl|mm7|chr8 (66800409-66800684) | |
| 833-948, gnl|Mm7|chr8 (66800450-66800565) | |
| 833-948, gnl|monDom2|scaffold_1 (78122670-78122945) | |
| 833-948, gnl|oryCun1|scaffold_199496 (219-502) | |
| 833-948, gnl|panTro1|chr7 (20161137-20161418) | |
| 833-948, gnl|rheMac2|chr8 (19295027-19295308) | |
| 833-948, gnl|rn3|chr16 (22959278-22959003) | |
| 833-948, gnl|xenTro1|scaffold_267 (1016531-1016282) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-137, gnl|bosTau2|chr27 (25109625-25109489) | |
| 1-137, gnl|Hg17|chr8 (19234768-19234904) | |
| 1-137, gnl|Mm7|chr8 (66748823-66748956) | |
| 386-500, gnl|bosTau2|chr27 (25084586-25084472) | |
| 386-500, gnl|canFam2|chr16 (25134349-25134477) | |
| 386-500, gnl|dasNov1|scaffold_84388 (617-500) | |
| 386-500, gnl|echTel1|scaffold_306380 (30317-30437) | |
| 386-500, gnl|hg17|chr8 (19262969-19263106) | |
| 386-500, gnl|Hg17|chr8 (19262991-19263105) | |
| 386-500, gnl|loxAfr1|scaffold_7264 (114773-114893) | |
| 386-500, gnl|mm7|chr8 (66783734-66783859) | |
| 386-500, gnl|Mm7|chr8 (66783747-66783858) | |
| 386-500, gnl|monDom2|scaffold_1 (78085445-78085603) | |
| 386-500, gnl|oryCun1|scaffold_179329 (62107-62233) | |
| 386-500, gnl|panTro1|chr7 (20129423-20129560) | |
| 386-500, gnl|rheMac2|chr8 (19262601-19262729) | |
| 386-500, gnl|rn3|chr16 (22978530-22978402) | |
| 501-702, gnl|bosTau2|chr27 (25083006-25082805) | |
| 501-702, gnl|canFam2|chr16 (25136083-25136371) | |
| 501-702, gnl|dasNov1|scaffold_51618 (3383-3068) | |
| 501-702, gnl|echTel1|scaffold_306380 (32335-32648) | |
| 501-702, gnl|hg17|chr8 (19265771-19266091) | |
| 501-702, gnl|Hg17|chr8 (19265863-19266073) | |
| 501-702, gnl|loxAfr1|scaffold_90234 (235-548) | |
| 501-702, gnl|mm7|chr8 (66785427-66785752) | |
| 501-702, gnl|Mm7|chr8 (66785533-66785734) | |
| 501-702, gnl|monDom2|scaffold_1 (78087813-78088135) | |
| 501-702, gnl|oryCun1|scaffold_179329 (65657-65969) | |
| 501-702, gnl|panTro1|chr7 (20132217-20132537) | |
| 501-702, gnl|rheMac2|chr8 (19265363-19265679) | |
| 501-702, gnl|rn3|chr16 (22976764-22976439) | |
| 833-948, gnl|bosTau2|chr27 (25065630-25065515) | |
| 833-948, gnl|canFam2|chr16 (25162163-25162437) | |
| 833-948, gnl|danRer3|chrUn (121014886-121014615) | |
| 833-948, gnl|dasNov1|scaffold_140969 (2046-1773) | |
| 833-948, gnl|echTel1|scaffold_315225 (41082-40805) | |
| 833-948, gnl|galGal2|chr4 (34553491-34553747) | |
| 833-948, gnl|hg17|chr8 (19295064-19295345) | |
| 833-948, gnl|Hg17|chr8 (19295108-19295226) | |
| 833-948, gnl|loxAfr1|scaffold_24297 (38954-39227) | |
| 833-948, gnl|mm7|chr8 (66800409-66800684) | |
| 833-948, gnl|Mm7|chr8 (66800450-66800565) | |
| 833-948, gnl|monDom2|scaffold_1 (78122670-78122945) | |
| 833-948, gnl|oryCun1|scaffold_199496 (219-502) | |
| 833-948, gnl|panTro1|chr7 (20161137-20161418) | |
| 833-948, gnl|rheMac2|chr8 (19295027-19295308) | |
| 833-948, gnl|rn3|chr16 (22959278-22959003) | |
| 833-948, gnl|xenTro1|scaffold_267 (1016531-1016282) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |