Non-Coding RNA Search

Ss1.1-rnje04c_a3.5

Sequence:


               
               CCTGTGTACCCGCCCCTAGCTACCCCTTGAAGTTTTAGGCAGCCGACTGAAGGAATTGAG
GTTTGTGAGCACCTGCCTGTTTGCGGAGAGACCCAAGAGGGGAGGTCTTACTTAGCACCG
CTCAATGAGTTGGTGGCCCAATTTAGCCAGGCTTTCTTCTTTCATTTCATAGATAACGTA
TTAAACACATGCTTATAGACCAGTCGCAGTGCTTGGCTCTGAGAAAACTAAGTTGGGAAC
GCCGGTCCGGGGGTGCTTCGCCCCGGCCGTTTGAGTCCAGATCGCACAGAGATGTGATAA
TGGATCATCATGTTTCCACCATCAAACCTAGACGGATCCAAAACCAAAACGTTATTCACC
GCTTGGAACGCCGGCGGATCAGTTCAGGCAAGGCAGGCACCCACTGGCATCAGGTTCGAG
TGTTCCACCAGAATGTCTTCCCCAACTTCACGGTTGTCAACGTTGAAAAGCCACCTTGTT
TCTTGCGGAAATTTTCTCCTGATGGACGCTATTTCATTGCTTTCTCTTCAGACCAGACAT
CTCTTGAAATCTATGAGTACCAGGGCTGCCAGGCAGCAGAGGACCTATTGCAGGGCTATG
AGGGGGAGATCTTGTCCAATGGCAATGACCAGCGGTCGGTCAACATCCGAGGCCGGCTCT
TTGAACGCTTTTTTGTCCTGCTGCACATCACCAACGTAGCGGCCAATGGTGAGCACCTGA
ACCGTGAGTGCAGCCTCTTCACTGATGACTGCCGGTGTGTTATCGTGGGCTCAGCTGCCT
ACCTCCCGGATGAGCCTCACCCTCCTTTTTATGAGGTGTATCGGAACAGTGAATCTGTGA
CTCCCAACCCCAGGTCCCCTCTGGAGGACTACTCTCTCCACATCATTGACCTTCACACCG
GCCGCTTATGTGATACCCCGTACCTTCAAGTGTGACAAAGTGGTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTGTACCCGCCCCTAGCTACCCCTTGAAGTTTTAGGCAGCCGACTGAAGGAATTGAG
GTTTGTGAGCACCTGCCTGTTTGCGGAGAGACCCAAGAGGGGAGGTCTTACTTAGCACCG
CTCAATGAGTTGGTGGCCCAATTTAGCCAGGCTTTCTTCTTTCATTTCATAGATAACGTA
TTAAACACATGCTTATAGACCAGTCGCAGTGCTTGGCTCTGAGAAAACTAAGTTGGGAAC
GCCGGTCCGGGGGTGCTTCGCCCCGGCCGTTTGAGTCCAGATCGCACAGAGATGTGATAA
TGGATCATCATGTTTCCACCATCAAACCTAGACGGATCCAAAACCAAAACGTTATTCACC
GCTTGGAACGCCGGCGGATCAGTTCAGGCAAGGCAGGCACCCACTGGCATCAGGTTCGAG
TGTTCCACCAGAATGTCTTCCCCAACTTCACGGTTGTCAACGTTGAAAAGCCACCTTGTT
TCTTGCGGAAATTTTCTCCTGATGGACGCTATTTCATTGCTTTCTCTTCAGACCAGACAT
CTCTTGAAATCTATGAGTACCAGGGCTGCCAGGCAGCAGAGGACCTATTGCAGGGCTATG
AGGGGGAGATCTTGTCCAATGGCAATGACCAGCGGTCGGTCAACATCCGAGGCCGGCTCT
TTGAACGCTTTTTTGTCCTGCTGCACATCACCAACGTAGCGGCCAATGGTGAGCACCTGA
ACCGTGAGTGCAGCCTCTTCACTGATGACTGCCGGTGTGTTATCGTGGGCTCAGCTGCCT
ACCTCCCGGATGAGCCTCACCCTCCTTTTTATGAGGTGTATCGGAACAGTGAATCTGTGA
CTCCCAACCCCAGGTCCCCTCTGGAGGACTACTCTCTCCACATCATTGACCTTCACACCG
GCCGCTTATGTGATACCCCGTACCTTCAAGTGTGACAAAGTGGTCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32264481|gb|AAP78731.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32264481|gb|AAP78731.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-235, gnl|bosTau2|chr21 (14626620-14626396)
               

               
               3-235, gnl|Mm7|chr7 (74710159-74709957)
               


               
               287-948, gnl|bosTau2|chr21 (14619368-14618708)
               

               
               287-948, gnl|Hg17|chr15 (86875953-86875293)
               

               
               287-948, gnl|Mm7|chr7 (74707463-74706803)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-235, gnl|bosTau2|chr21 (14626620-14626396)
               

               
               3-235, gnl|Mm7|chr7 (74710159-74709957)
               


               
               287-948, gnl|bosTau2|chr21 (14619368-14618708)
               

               
               287-948, gnl|Hg17|chr15 (86875953-86875293)
               

               
               287-948, gnl|Mm7|chr7 (74707463-74706803)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	3-235, gnl\|bosTau2\|chr21 (14626620-14626396)
	3-235, gnl\|Mm7\|chr7 (74710159-74709957)

	287-948, gnl\|bosTau2\|chr21 (14619368-14618708)
	287-948, gnl\|Hg17\|chr15 (86875953-86875293)
	287-948, gnl\|Mm7\|chr7 (74707463-74706803)