Non-Coding RNA Search

Ss1.1-rnje06c_b1.5

Sequence:


               
               CAGGAGCAGTAATCCGAGGTTCTGCAGGCAGAGCTGCCCCAACTGAGGACTCTCTGGCGG
TGAGAAAACTATGCGTTCTGCATTGGTCTGGAATGGATGGTAGCGAGATGGATTTTTATG
AGGACTACCAGTCCCCGTTTGATTTTAACACAGGAGTGAACAAAAGCTATCTCTACCTGT
CTCCTAATGGAAACGTATCCCCACCAGGATCACCTGCTCTCCAGAAACGTGGTCTGCTGA
GAACAGACCCGGTACCGGAGGAAGGAGAAGATGTCGCTGCCACGATCGGTGCCAATGAGC
CCCTATCAGAGGAGGAGCGAGAAGAGCTGAGAAGAGAACTTACAAAGGTAGAAGAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGCAGTAATCCGAGGTTCTGCAGGCAGAGCTGCCCCAACTGAGGACTCTCTGGCGG
TGAGAAAACTATGCGTTCTGCATTGGTCTGGAATGGATGGTAGCGAGATGGATTTTTATG
AGGACTACCAGTCCCCGTTTGATTTTAACACAGGAGTGAACAAAAGCTATCTCTACCTGT
CTCCTAATGGAAACGTATCCCCACCAGGATCACCTGCTCTCCAGAAACGTGGTCTGCTGA
GAACAGACCCGGTACCGGAGGAAGGAGAAGATGTCGCTGCCACGATCGGTGCCAATGAGC
CCCTATCAGAGGAGGAGCGAGAAGAGCTGAGAAGAGAACTTACAAAGGTAGAAGAAGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               59-233, - strand, RNAz p=0.990538

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-233, - strand, RNAz p=0.990538

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               29-233, gnl|bosTau2|chr14 (24544445-24544241)
               

               
               29-233, gnl|canFam2|chr29 (30461606-30461854)
               

               
               29-233, gnl|dasNov1|scaffold_5498 (13583-13841)
               

               
               29-233, gnl|echTel1|scaffold_175450 (4112-3835)
               

               
               29-233, gnl|galGal2|chr2 (120260089-120260299)
               

               
               29-233, gnl|hg17|chr8 (81155103-81155362)
               

               
               29-233, gnl|Hg17|chr8 (81155311-81155103)
               

               
               29-233, gnl|mm7|chr3 (8970347-8970594)
               

               
               29-233, gnl|Mm7|chr3 (8970557-8970347)
               

               
               29-233, gnl|monDom2|scaffold_4 (77945279-77945039)
               

               
               29-233, gnl|oryCun1|scaffold_148289 (1560-1811)
               

               
               29-233, gnl|panTro1|chr7 (83282376-83282635)
               

               
               29-233, gnl|rheMac2|chr8 (82504626-82504885)
               

               
               29-233, gnl|rn3|chr2 (94795337-94795102)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-233, gnl|bosTau2|chr14 (24544445-24544241)
               

               
               29-233, gnl|canFam2|chr29 (30461606-30461854)
               

               
               29-233, gnl|dasNov1|scaffold_5498 (13583-13841)
               

               
               29-233, gnl|echTel1|scaffold_175450 (4112-3835)
               

               
               29-233, gnl|galGal2|chr2 (120260089-120260299)
               

               
               29-233, gnl|hg17|chr8 (81155103-81155362)
               

               
               29-233, gnl|Hg17|chr8 (81155311-81155103)
               

               
               29-233, gnl|mm7|chr3 (8970347-8970594)
               

               
               29-233, gnl|Mm7|chr3 (8970557-8970347)
               

               
               29-233, gnl|monDom2|scaffold_4 (77945279-77945039)
               

               
               29-233, gnl|oryCun1|scaffold_148289 (1560-1811)
               

               
               29-233, gnl|panTro1|chr7 (83282376-83282635)
               

               
               29-233, gnl|rheMac2|chr8 (82504626-82504885)
               

               
               29-233, gnl|rn3|chr2 (94795337-94795102)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nje (0.16592)
               

               
               cki (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               cki (0.165235)

	29-233, gnl\|bosTau2\|chr14 (24544445-24544241)
	29-233, gnl\|canFam2\|chr29 (30461606-30461854)
	29-233, gnl\|dasNov1\|scaffold_5498 (13583-13841)
	29-233, gnl\|echTel1\|scaffold_175450 (4112-3835)
	29-233, gnl\|galGal2\|chr2 (120260089-120260299)
	29-233, gnl\|hg17\|chr8 (81155103-81155362)
	29-233, gnl\|Hg17\|chr8 (81155311-81155103)
	29-233, gnl\|mm7\|chr3 (8970347-8970594)
	29-233, gnl\|Mm7\|chr3 (8970557-8970347)
	29-233, gnl\|monDom2\|scaffold_4 (77945279-77945039)
	29-233, gnl\|oryCun1\|scaffold_148289 (1560-1811)
	29-233, gnl\|panTro1\|chr7 (83282376-83282635)
	29-233, gnl\|rheMac2\|chr8 (82504626-82504885)
	29-233, gnl\|rn3\|chr2 (94795337-94795102)