Non-Coding RNA Search

Ss1.1-rnje06c_g23.5

Sequence:


               
               GAGAAGACATTCAGCCAGCATTCCCAGCTGATCATACACCAGAGAATTCACACCGGAGAG
AAGCCTTACGAGTGCCAGGAATGTCAGAAGACCTTTAGCCGGAGCTCTCACCTCCTCCGA
CATCAGAGTGTTCACTGTGTGGAATGATGTGCAGACCAGGAAAGCGGAAGTCAGACTTCT
CGTTCTTAATCTGCACCCCAGGTTCTTAGATCCAATGACTGGACAGAACCTCCTCTGCCC
TTTTACTGATTTTTATTCAACCAGTTGGTCGAAAAGGATGAGGCACTTTTAGGAACCATT
CAGGACGTTTCCGTGTACTGAGCTAAGTCATAAGAGCTCTTTCAGGCCTTCATTCTCCTC
TGTCCCTTTTTCCTTCTCTTCTTCCCCCCTCCCCTCGCGGATCACGTAATATTCGGGCTC
TGTACCAGCCGCCCAGCCCAAACGGTTGCTGTTTAGGAAAAATGGAGTGTGCTTGTACTA
CCTCCTAAGAAAGACAGAGTCGACTCCTTGACTATTATCCCCTGAAACATTAAAATCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGACATTCAGCCAGCATTCCCAGCTGATCATACACCAGAGAATTCACACCGGAGAG
AAGCCTTACGAGTGCCAGGAATGTCAGAAGACCTTTAGCCGGAGCTCTCACCTCCTCCGA
CATCAGAGTGTTCACTGTGTGGAATGATGTGCAGACCAGGAAAGCGGAAGTCAGACTTCT
CGTTCTTAATCTGCACCCCAGGTTCTTAGATCCAATGACTGGACAGAACCTCCTCTGCCC
TTTTACTGATTTTTATTCAACCAGTTGGTCGAAAAGGATGAGGCACTTTTAGGAACCATT
CAGGACGTTTCCGTGTACTGAGCTAAGTCATAAGAGCTCTTTCAGGCCTTCATTCTCCTC
TGTCCCTTTTTCCTTCTCTTCTTCCCCCCTCCCCTCGCGGATCACGTAATATTCGGGCTC
TGTACCAGCCGCCCAGCCCAAACGGTTGCTGTTTAGGAAAAATGGAGTGTGCTTGTACTA
CCTCCTAAGAAAGACAGAGTCGACTCCTTGACTATTATCCCCTGAAACATTAAAATCATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               173-266, - strand, RNAz p=0.706534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-266, - strand, RNAz p=0.706534

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-540, gnl|bosTau2|chr19 (14940942-14941502)
               

               
               1-540, gnl|Hg17|chr17 (4936955-4937608)
               

               
               1-540, gnl|Mm7|chr11 (70854138-70854664)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr19 (14940942-14941502)
               

               
               1-540, gnl|Hg17|chr17 (4936955-4937608)
               

               
               1-540, gnl|Mm7|chr11 (70854138-70854664)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

	1-540, gnl\|bosTau2\|chr19 (14940942-14941502)
	1-540, gnl\|Hg17\|chr17 (4936955-4937608)
	1-540, gnl\|Mm7\|chr11 (70854138-70854664)