Ss1.1-rnje07c_a9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTCTCATGCGTGTACTTCGGAATGACCTGGCTCGTTACAACTTGGATGAGGAGACAAC CTCAGGAGGTTCTGGTGATGACTTTGACCAAGGTGACAATGGCTGGAAAATTATCCATAC AGATGTCTTCCGCTTCCCTCCATACCGTGGTCTGCTCTGTGCTGTGCTTGGTGTGGGTGC CCAGTTCCTGGCCCTTGGCACTGGCATCATTGTCATGGCGCTGCTAGGCATGTTCAATGT GCATCGTCACGGGGCCATTAACTCAGCAGCCATCTTGCTGTATGCCCTGACTTGCTGCAT CTCTGGCTACGTGTCCAGCCACTTCTACCGGCAGATCGGAGGCGAGCGTTGGGTGTGGAA CATCATTCTCACCACCAGTCTCTTCTCTGTGCCTTTCTTCCTGACGTGGAGTGTCGTGAA CTCCGTGCACTGGGCCAATGGTTCAACACAGGCTCTGCCAGCCACCACCATCCTGCTGCT TCTGACGGTTTGGCTGCTGGTGGGCTTTCCCCTCACTGTCATTGGAGGCATCTTCGGGAA GAACAATGCTAGCCTGTTTGATGCACCTTGTCGCACCAAGAACATCGCTCGGGAAATCCC GCCCCAGCCCTGGTACAAGTCTACTCTCATCCACATGACTGTTGGAGGCTTCCTGCCTTT CAGTGCCATCTCTGTGGAGCTGTACTACATCTTTGCCACAGTGTGGGGTCGGGAGCAGTA CACTTTGTATGGCATCCTCTTCTTCGTCTTCGCCATCCTGCTGAGTGTGGGGGCTTGCAT CTCCATCGCACTCACCTACTTCCAGCTGTCTGGGGAGGATTACCGCTGGTGGTGGCGATC TGTGCTGAGTGTTGGCTCCACTGGGCTCTTCATCTTCCTCTACTCAGTTTTCTACTATGC CCGGCGCTCCAACATGTCAGGGGTAGTACAGACGGTAGAGTTCTTTGGCTACTCCTTACT CACTGGATACGTCTTCTTCCTCATGCTGGGCACCATCTCCTTTTTTTCTTCCCTAAAGTT CATCCGTTATATCTATGTTAACCTCAAGATGGACTGAGTTTGGGGTGGCAAAACTATTGC TCTTCTTTCCCTTTCTTCATACCCCATCGATCTCTTACCGTCATCTTTTCTGACTGAGTG AATGAGTTGTGTGATGGCTTTGTTGTCTTCCCCTTTGCCCTTTGGGCCTTCCTTCCCCAG GGAGGGCCTGGAAATTATAAGTCTCTATTATATAAGGAGTATATATTTGAACTTTTTAAG TTGCCTTTAGTTTTGCTCCTGATTTTTCTTTTTACAATGCCAAAATAAAATTTATTAAGA AAAAGGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTCTCATGCGTGTACTTCGGAATGACCTGGCTCGTTACAACTTGGATGAGGAGACAAC CTCAGGAGGTTCTGGTGATGACTTTGACCAAGGTGACAATGGCTGGAAAATTATCCATAC AGATGTCTTCCGCTTCCCTCCATACCGTGGTCTGCTCTGTGCTGTGCTTGGTGTGGGTGC CCAGTTCCTGGCCCTTGGCACTGGCATCATTGTCATGGCGCTGCTAGGCATGTTCAATGT GCATCGTCACGGGGCCATTAACTCAGCAGCCATCTTGCTGTATGCCCTGACTTGCTGCAT CTCTGGCTACGTGTCCAGCCACTTCTACCGGCAGATCGGAGGCGAGCGTTGGGTGTGGAA CATCATTCTCACCACCAGTCTCTTCTCTGTGCCTTTCTTCCTGACGTGGAGTGTCGTGAA CTCCGTGCACTGGGCCAATGGTTCAACACAGGCTCTGCCAGCCACCACCATCCTGCTGCT TCTGACGGTTTGGCTGCTGGTGGGCTTTCCCCTCACTGTCATTGGAGGCATCTTCGGGAA GAACAATGCTAGCCTGTTTGATGCACCTTGTCGCACCAAGAACATCGCTCGGGAAATCCC GCCCCAGCCCTGGTACAAGTCTACTCTCATCCACATGACTGTTGGAGGCTTCCTGCCTTT CAGTGCCATCTCTGTGGAGCTGTACTACATCTTTGCCACAGTGTGGGGTCGGGAGCAGTA CACTTTGTATGGCATCCTCTTCTTCGTCTTCGCCATCCTGCTGAGTGTGGGGGCTTGCAT CTCCATCGCACTCACCTACTTCCAGCTGTCTGGGGAGGATTACCGCTGGTGGTGGCGATC TGTGCTGAGTGTTGGCTCCACTGGGCTCTTCATCTTCCTCTACTCAGTTTTCTACTATGC CCGGCGCTCCAACATGTCAGGGGTAGTACAGACGGTAGAGTTCTTTGGCTACTCCTTACT CACTGGATACGTCTTCTTCCTCATGCTGGGCACCATCTCCTTTTTTTCTTCCCTAAAGTT CATCCGTTATATCTATGTTAACCTCAAGATGGACTGAGTTTGGGGTGGCAAAACTATTGC TCTTCTTTCCCTTTCTTCATACCCCATCGATCTCTTACCGTCATCTTTTCTGACTGAGTG AATGAGTTGTGTGATGGCTTTGTTGTCTTCCCCTTTGCCCTTTGGGCCTTCCTTCCCCAG GGAGGGCCTGGAAATTATAAGTCTCTATTATATAAGGAGTATATATTTGAACTTTTTAAG TTGCCTTTAGTTTTGCTCCTGATTTTTCTTTTTACAATGCCAAAATAAAATTTATTAAGA AAAAGGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 2-204, gnl|bosTau2|chr10 (12295128-12295330) | |
| 2-204, gnl|canFam2|chr8 (7189463-7189634) | |
| 2-204, gnl|danRer3|chrNA (162745632-162745786) | |
| 2-204, gnl|dasNov1|scaffold_39187 (4208-4037) | |
| 2-204, gnl|echTel1|scaffold_321870 (46261-46406) | |
| 2-204, gnl|fr1|chrUn (82306297-82306138) | |
| 2-204, gnl|hg17|chr14 (23731688-23731859) | |
| 2-204, gnl|Hg17|chr14 (23731895-23731693) | |
| 2-204, gnl|loxAfr1|scaffold_45617 (11408-11579) | |
| 2-204, gnl|mm7|chr14 (50508313-50508484) | |
| 2-204, gnl|Mm7|chr14 (50508520-50508318) | |
| 2-204, gnl|monDom2|scaffold_12 (25566892-25566721) | |
| 2-204, gnl|oryCun1|scaffold_143183 (913-1084) | |
| 2-204, gnl|panTro1|chr15 (22633298-22633469) | |
| 2-204, gnl|rheMac2|chr7 (87088028-87088199) | |
| 2-204, gnl|rn3|chr15 (33792363-33792534) | |
| 2-204, gnl|tetNig1|chrUn_random (163175090-163174931) | |
| 2-204, gnl|xenTro1|scaffold_53 (593631-593784) | |
| 661-1326, gnl|bosTau2|chr10 (12297534-12298195) | |
| 661-1326, gnl|Hg17|chr14 (23728857-23728193) | |
| 661-1326, gnl|Mm7|chr14 (50503967-50503318) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-204, gnl|bosTau2|chr10 (12295128-12295330) | |
| 2-204, gnl|canFam2|chr8 (7189463-7189634) | |
| 2-204, gnl|danRer3|chrNA (162745632-162745786) | |
| 2-204, gnl|dasNov1|scaffold_39187 (4208-4037) | |
| 2-204, gnl|echTel1|scaffold_321870 (46261-46406) | |
| 2-204, gnl|fr1|chrUn (82306297-82306138) | |
| 2-204, gnl|hg17|chr14 (23731688-23731859) | |
| 2-204, gnl|Hg17|chr14 (23731895-23731693) | |
| 2-204, gnl|loxAfr1|scaffold_45617 (11408-11579) | |
| 2-204, gnl|mm7|chr14 (50508313-50508484) | |
| 2-204, gnl|Mm7|chr14 (50508520-50508318) | |
| 2-204, gnl|monDom2|scaffold_12 (25566892-25566721) | |
| 2-204, gnl|oryCun1|scaffold_143183 (913-1084) | |
| 2-204, gnl|panTro1|chr15 (22633298-22633469) | |
| 2-204, gnl|rheMac2|chr7 (87088028-87088199) | |
| 2-204, gnl|rn3|chr15 (33792363-33792534) | |
| 2-204, gnl|tetNig1|chrUn_random (163175090-163174931) | |
| 2-204, gnl|xenTro1|scaffold_53 (593631-593784) | |
| 661-1326, gnl|bosTau2|chr10 (12297534-12298195) | |
| 661-1326, gnl|Hg17|chr14 (23728857-23728193) | |
| 661-1326, gnl|Mm7|chr14 (50503967-50503318) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| nmm (0.265604) | |
| cov (0.264306) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| eli (0.151814) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.265604) | |
| cov (0.264306) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| eli (0.151814) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) |