Ss1.1-rnje07c_m22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGCCCACAGAGCCCAAGTCTGACATGTTGTACAAGCTCGAGGACGTGCCACCCTGGTA CCTGTGCATCCTGCTCGGCTTCCAGCATTACCTGACCTGCTTCAGCGGCACCATCGCTGT GCCCTTCCTCCTGGCGGAGGCGCTGTGTGTGGGCCGTGACCAGTACATGGTCAGCCAGCT CATTGGCACCATCTTCACCTGTGTGGGCATCACCACCCTCATCCAGACCACACTGGGCAT CCGGCTGCCGCTGTTCCAGGCCAGCGCCTTTGCATTTCTGGTCCCAGCCAAGTCCATCCT GGCACTGGAGAGATGGAAATGCCCCCCGGAAGAGGAGATCTACGGTAACTGGAGCCTGCC TCTGAACACCTCTCACGTCTGGCATCCACGCATGCGAGAGGTCCAGGGTGCAATCATGGT GTCCAGCATGGTGGAGGTGGTGATTGGGCTGACGGGGCTGCCTGGGGCCCTGCTCAGCTA CATTGGGCCTCTTACAGTCACCCCCACCGTCTCCCTCATTGGCCTCTCTGTCTTCCAAGC TGCTGGTGACAGAGCTGGCTCCCACTGGGGCATCTCAGCTTGCTCCATTCTCCTGATCAT CCTGTTCTCCCAATACCTGCGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGCCCACAGAGCCCAAGTCTGACATGTTGTACAAGCTCGAGGACGTGCCACCCTGGTA CCTGTGCATCCTGCTCGGCTTCCAGCATTACCTGACCTGCTTCAGCGGCACCATCGCTGT GCCCTTCCTCCTGGCGGAGGCGCTGTGTGTGGGCCGTGACCAGTACATGGTCAGCCAGCT CATTGGCACCATCTTCACCTGTGTGGGCATCACCACCCTCATCCAGACCACACTGGGCAT CCGGCTGCCGCTGTTCCAGGCCAGCGCCTTTGCATTTCTGGTCCCAGCCAAGTCCATCCT GGCACTGGAGAGATGGAAATGCCCCCCGGAAGAGGAGATCTACGGTAACTGGAGCCTGCC TCTGAACACCTCTCACGTCTGGCATCCACGCATGCGAGAGGTCCAGGGTGCAATCATGGT GTCCAGCATGGTGGAGGTGGTGATTGGGCTGACGGGGCTGCCTGGGGCCCTGCTCAGCTA CATTGGGCCTCTTACAGTCACCCCCACCGTCTCCCTCATTGGCCTCTCTGTCTTCCAAGC TGCTGGTGACAGAGCTGGCTCCCACTGGGGCATCTCAGCTTGCTCCATTCTCCTGATCAT CCTGTTCTCCCAATACCTGCGAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 83-231, gnl|bosTau2|chr13 (30667783-30667931) | |
| 83-231, gnl|canFam2|chr2 (37555180-37555360) | |
| 83-231, gnl|canFam2|chr24 (19658067-19657855) | |
| 83-231, gnl|danRer3|chr21 (20021377-20021543) | |
| 83-231, gnl|danRer3|chrUn (28501479-28501694) | |
| 83-231, gnl|dasNov1|scaffold_122043 (1360-1186) | |
| 83-231, gnl|dasNov1|scaffold_176893 (5487-5277) | |
| 83-231, gnl|echTel1|scaffold_234508 (18618-18826) | |
| 83-231, gnl|echTel1|scaffold_312573 (11265-11448) | |
| 83-231, gnl|fr1|chrUn (60652121-60651939) | |
| 83-231, gnl|fr1|chrUn (218100912-218100726) | |
| 83-231, gnl|galGal2|chr22 (382956-382778) | |
| 83-231, gnl|galGal2|chrUn (99590915-99590730) | |
| 83-231, gnl|hg17|chr20 (4828191-4828405) | |
| 83-231, gnl|Hg17|chr20 (4828361-4828213) | |
| 83-231, gnl|hg17|chr5 (138745476-138745665) | |
| 83-231, gnl|loxAfr1|scaffold_25975 (14405-14594) | |
| 83-231, gnl|loxAfr1|scaffold_25975 (14405-14590) | |
| 83-231, gnl|mm7|chr18 (36001905-36002090) | |
| 83-231, gnl|mm7|chr2 (131829939-131830146) | |
| 83-231, gnl|Mm7|chr2 (131830109-131829961) | |
| 83-231, gnl|monDom2|scaffold_1 (94801323-94801501) | |
| 83-231, gnl|monDom2|scaffold_6 (69715208-69715023) | |
| 83-231, gnl|oryCun1|scaffold_93325 (14296-14118) | |
| 83-231, gnl|oryCun1|scaffold_93325 (14296-14109) | |
| 83-231, gnl|panTro1|chr21 (4792543-4792757) | |
| 83-231, gnl|panTro1|chr4 (145347928-145348117) | |
| 83-231, gnl|rheMac2|chr10 (38239470-38239684) | |
| 83-231, gnl|rheMac2|chr6 (135802598-135802787) | |
| 83-231, gnl|rn3|chr18 (28276225-28276410) | |
| 83-231, gnl|rn3|chr3 (119734615-119734823) | |
| 83-231, gnl|tetNig1|chr12 (9589982-9590153) | |
| 83-231, gnl|tetNig1|chr7 (10100112-10099950) | |
| 83-231, gnl|xenTro1|scaffold_110 (749142-749329) | |
| 83-231, gnl|xenTro1|scaffold_110 (749143-749332) | |
| 370-574, gnl|bosTau2|chr13 (30685617-30685820) | |
| 370-574, gnl|canFam2|chr24 (19675871-19675651) | |
| 370-574, gnl|danRer3|chrUn (28485224-28485435) | |
| 370-574, gnl|dasNov1|scaffold_7888 (42564-42359) | |
| 370-574, gnl|echTel1|scaffold_234508 (6861-7085) | |
| 370-574, gnl|fr1|chrUn (60653770-60653558) | |
| 370-574, gnl|galGal2|chr22 (391036-390820) | |
| 370-574, gnl|hg17|chr20 (4812281-4812499) | |
| 370-574, gnl|Hg17|chr20 (4812499-4812296) | |
| 370-574, gnl|loxAfr1|scaffold_16772 (9184-8968) | |
| 370-574, gnl|mm7|chr2 (131816345-131816562) | |
| 370-574, gnl|Mm7|chr2 (131816562-131816360) | |
| 370-574, gnl|monDom2|scaffold_1 (94796224-94796435) | |
| 370-574, gnl|oryCun1|scaffold_77002 (705-923) | |
| 370-574, gnl|panTro1|chr21 (4776212-4776430) | |
| 370-574, gnl|rheMac2|chr10 (38223821-38224039) | |
| 370-574, gnl|rn3|chr3 (119720960-119721175) | |
| 370-574, gnl|tetNig1|chr12 (9588960-9589156) | |
| 370-574, gnl|xenTro1|scaffold_110 (745941-746156) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-231, gnl|bosTau2|chr13 (30667783-30667931) | |
| 83-231, gnl|canFam2|chr2 (37555180-37555360) | |
| 83-231, gnl|canFam2|chr24 (19658067-19657855) | |
| 83-231, gnl|danRer3|chr21 (20021377-20021543) | |
| 83-231, gnl|danRer3|chrUn (28501479-28501694) | |
| 83-231, gnl|dasNov1|scaffold_122043 (1360-1186) | |
| 83-231, gnl|dasNov1|scaffold_176893 (5487-5277) | |
| 83-231, gnl|echTel1|scaffold_234508 (18618-18826) | |
| 83-231, gnl|echTel1|scaffold_312573 (11265-11448) | |
| 83-231, gnl|fr1|chrUn (60652121-60651939) | |
| 83-231, gnl|fr1|chrUn (218100912-218100726) | |
| 83-231, gnl|galGal2|chr22 (382956-382778) | |
| 83-231, gnl|galGal2|chrUn (99590915-99590730) | |
| 83-231, gnl|hg17|chr20 (4828191-4828405) | |
| 83-231, gnl|Hg17|chr20 (4828361-4828213) | |
| 83-231, gnl|hg17|chr5 (138745476-138745665) | |
| 83-231, gnl|loxAfr1|scaffold_25975 (14405-14594) | |
| 83-231, gnl|loxAfr1|scaffold_25975 (14405-14590) | |
| 83-231, gnl|mm7|chr18 (36001905-36002090) | |
| 83-231, gnl|mm7|chr2 (131829939-131830146) | |
| 83-231, gnl|Mm7|chr2 (131830109-131829961) | |
| 83-231, gnl|monDom2|scaffold_1 (94801323-94801501) | |
| 83-231, gnl|monDom2|scaffold_6 (69715208-69715023) | |
| 83-231, gnl|oryCun1|scaffold_93325 (14296-14118) | |
| 83-231, gnl|oryCun1|scaffold_93325 (14296-14109) | |
| 83-231, gnl|panTro1|chr21 (4792543-4792757) | |
| 83-231, gnl|panTro1|chr4 (145347928-145348117) | |
| 83-231, gnl|rheMac2|chr10 (38239470-38239684) | |
| 83-231, gnl|rheMac2|chr6 (135802598-135802787) | |
| 83-231, gnl|rn3|chr18 (28276225-28276410) | |
| 83-231, gnl|rn3|chr3 (119734615-119734823) | |
| 83-231, gnl|tetNig1|chr12 (9589982-9590153) | |
| 83-231, gnl|tetNig1|chr7 (10100112-10099950) | |
| 83-231, gnl|xenTro1|scaffold_110 (749142-749329) | |
| 83-231, gnl|xenTro1|scaffold_110 (749143-749332) | |
| 370-574, gnl|bosTau2|chr13 (30685617-30685820) | |
| 370-574, gnl|canFam2|chr24 (19675871-19675651) | |
| 370-574, gnl|danRer3|chrUn (28485224-28485435) | |
| 370-574, gnl|dasNov1|scaffold_7888 (42564-42359) | |
| 370-574, gnl|echTel1|scaffold_234508 (6861-7085) | |
| 370-574, gnl|fr1|chrUn (60653770-60653558) | |
| 370-574, gnl|galGal2|chr22 (391036-390820) | |
| 370-574, gnl|hg17|chr20 (4812281-4812499) | |
| 370-574, gnl|Hg17|chr20 (4812499-4812296) | |
| 370-574, gnl|loxAfr1|scaffold_16772 (9184-8968) | |
| 370-574, gnl|mm7|chr2 (131816345-131816562) | |
| 370-574, gnl|Mm7|chr2 (131816562-131816360) | |
| 370-574, gnl|monDom2|scaffold_1 (94796224-94796435) | |
| 370-574, gnl|oryCun1|scaffold_77002 (705-923) | |
| 370-574, gnl|panTro1|chr21 (4776212-4776430) | |
| 370-574, gnl|rheMac2|chr10 (38223821-38224039) | |
| 370-574, gnl|rn3|chr3 (119720960-119721175) | |
| 370-574, gnl|tetNig1|chr12 (9588960-9589156) | |
| 370-574, gnl|xenTro1|scaffold_110 (745941-746156) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| jej (0.197844) |