Non-Coding RNA Search

Ss1.1-rnje09c_j7.5

Sequence:


               
               GATCCCACTAACCATAAAGAGAGAAAACACAGATGGTCAGACAGAAACATGCACAACCTA
CAGTAAGTGGGGACAACATCCAGGAGCTCCTAGGCCACCCTGTGGAGAAGCCTGTTGTCC
TGCACAGGTCCTCCTCCCCAAACAACACCAATCCATTTGGCTCCACCTTCTGCTTGGGTC
TTCAGCGGATGATCTTTGAAGTCATGCAGAACAACCACATTGCCTCCGTGACCCTTTATG
GCCCCCCCAGGCCTGGTGCCCACCTGAGAACCGCAGAGCTCCCTTAGGGACATCACCACC
CATGTCCATCTGCCCCATGGAACTTTGCATCGCATCCTGTTCAGCGGGCCTCCCTGTGCC
ACCTTGTGGGTTTCCTTGGACACCTTGCCAGTGTGGAAGGGCTGTTGTGATGTTTTGCAG
TGGGGCTCAGGCTGGGTGCTCTGCCATGGGTGAGAGACCCAAATGTTCCTCTGTCCATTC
TCAGCCTGCTGGTGCCAACAGGAACACAGACTGCAGAGAGAAGCACAAACTCTGAGCCTT
GATACCGGGACCCAGGAGCCTCTGGACTAACACATAGGGAGGCAGGGTTCTCTCTCCCCT
GTCCCACATACATTGGGAAAACTTGGGGCGCTTACTGTGGCTAAGGAGACAGGAACAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCCCACTAACCATAAAGAGAGAAAACACAGATGGTCAGACAGAAACATGCACAACCTA
CAGTAAGTGGGGACAACATCCAGGAGCTCCTAGGCCACCCTGTGGAGAAGCCTGTTGTCC
TGCACAGGTCCTCCTCCCCAAACAACACCAATCCATTTGGCTCCACCTTCTGCTTGGGTC
TTCAGCGGATGATCTTTGAAGTCATGCAGAACAACCACATTGCCTCCGTGACCCTTTATG
GCCCCCCCAGGCCTGGTGCCCACCTGAGAACCGCAGAGCTCCCTTAGGGACATCACCACC
CATGTCCATCTGCCCCATGGAACTTTGCATCGCATCCTGTTCAGCGGGCCTCCCTGTGCC
ACCTTGTGGGTTTCCTTGGACACCTTGCCAGTGTGGAAGGGCTGTTGTGATGTTTTGCAG
TGGGGCTCAGGCTGGGTGCTCTGCCATGGGTGAGAGACCCAAATGTTCCTCTGTCCATTC
TCAGCCTGCTGGTGCCAACAGGAACACAGACTGCAGAGAGAAGCACAAACTCTGAGCCTT
GATACCGGGACCCAGGAGCCTCTGGACTAACACATAGGGAGGCAGGGTTCTCTCTCCCCT
GTCCCACATACATTGGGAAAACTTGGGGCGCTTACTGTGGCTAAGGAGACAGGAACAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47204496|emb|CAF94491.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47204496|emb|CAF94491.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               396-543, + strand, RNAz p=0.991485

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               396-543, + strand, RNAz p=0.991485

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_025187, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_025187, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               101-653, gnl|bosTau2|chr11 (49535499-49536048)
               

               
               101-653, gnl|Hg17|chr16 (65737009-65738896)
               

               
               101-653, gnl|Mm7|chr10 (55918712-55918182)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-653, gnl|bosTau2|chr11 (49535499-49536048)
               

               
               101-653, gnl|Hg17|chr16 (65737009-65738896)
               

               
               101-653, gnl|Mm7|chr10 (55918712-55918182)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               cag (0.151194)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               ebs (0.118301)

	101-653, gnl\|bosTau2\|chr11 (49535499-49536048)
	101-653, gnl\|Hg17\|chr16 (65737009-65738896)
	101-653, gnl\|Mm7\|chr10 (55918712-55918182)