Non-Coding RNA Search

Ss1.1-rnje09c_k14.5

Sequence:


               
               CCCTCCGTCGCCCGCTTCCTGAACCAGTCATGCTGGAGCATCTGAGCTCGCTGCCCACGC
AGATGGATTACAAGGGCCAGAAGCTAGCTGAACAGATGTTTCAGGGAATTATTCTTTTTT
CTGCAGTAAGTATTGGTTTTGCATAATCTTCTCTCCCCGTCTCCCCCCCACCCTAGCTTG
ACTGTATTTAATATACTTTGTTTGTCTCTAGATAGTTGGATTTATCTACGGGTACGTGGC
TGAACAGTTCGGGTGGACTGTCTATATAGTTATGGCGGGATTTGCCTTTTCGTGCTTGGT
AAGGAAATTTGTGGATATTTGGATGTTAGTGGCAACTCAGGTTTTTTCTGAATTGGGTTG
TTTTGGCCGGACCTAGTAGTGAGGACCAACACCAACTTTTCCCTCATCCTTCCCTTGCTA
TCATTGGAAAATTAAGTGCCAAGTAGTATCACATGAGGTTAAGCTCCATAAGGAATACAG
CTCATTCATTTCTTTTGGCAGGTGCGCCAAGCAGTAATCTTATAAAGTCAAAGCTAGATC
TTAAGACTTTATGGTCTTCACAGTGCTCCCTCCTCTTTTATCTCTTAAAAGCGTGTGTAA
ACAGTGAAGCTTGTTCTCACTTGGAGTATCTTGTCTGGATGGTGGCACAGTTTTCAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCGTCGCCCGCTTCCTGAACCAGTCATGCTGGAGCATCTGAGCTCGCTGCCCACGC
AGATGGATTACAAGGGCCAGAAGCTAGCTGAACAGATGTTTCAGGGAATTATTCTTTTTT
CTGCAGTAAGTATTGGTTTTGCATAATCTTCTCTCCCCGTCTCCCCCCCACCCTAGCTTG
ACTGTATTTAATATACTTTGTTTGTCTCTAGATAGTTGGATTTATCTACGGGTACGTGGC
TGAACAGTTCGGGTGGACTGTCTATATAGTTATGGCGGGATTTGCCTTTTCGTGCTTGGT
AAGGAAATTTGTGGATATTTGGATGTTAGTGGCAACTCAGGTTTTTTCTGAATTGGGTTG
TTTTGGCCGGACCTAGTAGTGAGGACCAACACCAACTTTTCCCTCATCCTTCCCTTGCTA
TCATTGGAAAATTAAGTGCCAAGTAGTATCACATGAGGTTAAGCTCCATAAGGAATACAG
CTCATTCATTTCTTTTGGCAGGTGCGCCAAGCAGTAATCTTATAAAGTCAAAGCTAGATC
TTAAGACTTTATGGTCTTCACAGTGCTCCCTCCTCTTTTATCTCTTAAAAGCGTGTGTAA
ACAGTGAAGCTTGTTCTCACTTGGAGTATCTTGTCTGGATGGTGGCACAGTTTTCAGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51701929|sp||P83362_1

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51701929|sp||P83362_1

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-401, - strand, RNAz p=0.865735

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-401, - strand, RNAz p=0.865735

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               65-401, gnl|bosTau2|chr22 (39684864-39685185)
               

               
               65-401, gnl|Hg17|chr3 (52715699-52716055)
               

               
               65-401, gnl|Mm7|chr14 (28430551-28430203)
               


               
               432-660, gnl|bosTau2|chr22 (39685183-39685404)
               

               
               432-660, gnl|Hg17|chr3 (52716053-52716613)
               

               
               432-660, gnl|Mm7|chr14 (28430205-28429974)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-401, gnl|bosTau2|chr22 (39684864-39685185)
               

               
               65-401, gnl|Hg17|chr3 (52715699-52716055)
               

               
               65-401, gnl|Mm7|chr14 (28430551-28430203)
               


               
               432-660, gnl|bosTau2|chr22 (39685183-39685404)
               

               
               432-660, gnl|Hg17|chr3 (52716053-52716613)
               

               
               432-660, gnl|Mm7|chr14 (28430205-28429974)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               fat (0.147427)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               cbl (0.114797)

	65-401, gnl\|bosTau2\|chr22 (39684864-39685185)
	65-401, gnl\|Hg17\|chr3 (52715699-52716055)
	65-401, gnl\|Mm7\|chr14 (28430551-28430203)

	432-660, gnl\|bosTau2\|chr22 (39685183-39685404)
	432-660, gnl\|Hg17\|chr3 (52716053-52716613)
	432-660, gnl\|Mm7\|chr14 (28430205-28429974)