Ss1.1-rnje09c_o10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCCAGTCCCGCGCCCGGACTTTGCCATCGCCGGGGGCCCGGCCGCGGGAGCGCC CCCTCCTGCGTCCCAGAACCGCAGCCTCAGCTTCAGCCCATGCGGGGGATTGACCGGGAC TGAGGGACCCTCCTGGAAGCATGGAGACTGTGGTGATTGTGGCCATAGGCGTGCTGGCCA CCATCTTTCTGGCCTCATTTGCAGCCTTGGTAGTGGTTTGCAGGCAGCGCTACTGCCGGC CCCGGGACCTCCTGCAGCGCTATGATTCCAAGCCCATCGTGGACCTCATCAGCGCCATGG AGACCCAGTCTGAGCCCTCCGAGCTCGAGCTGGGTGACGTTGTCATCACCAACCCCCACA TCGAGGCCATTCTGGAGAATGAAGACTGGATTGAAGATGCCTCGGGTCTCATGTCCCACT GCATTGCCATCTTGAAGATTTGTCACACTCTGACGGAAAAACTAGTTGCCATGACAATGG GGTCCGGGGCCAAGATGAAGAATTCAGCCAGTGTCAGTGACATCATCGTGGTGGCCAAGC GGATCAGCCCCAGAGTGGACGATGTGGTGAAATCGATGTACCCTCCGTTGGACCCGAAGC TTCTGGATGCCCGGACAACTGCCCTGCTCCTGTCGGTGAGTCATCTCGTGCTGGTGACCA GGAATGCCTGCCACCTGACTGGGGGCCTGGATTGGATCGACCAGTCACTGTCAGCCGCCG AGGAGCACCTGGAAGTCCTTCGAGAAGCAGCCTTGGCTTCCGAGCCAGATAAAGGCCTCC CGGGCCCCGAAGGCTTCCTGCAGGAGCAGTCAGCTATTTAGTGCCTACCGGCCAGGAGCT GATCCCAAAGGGCCAGCCCACTGCCACGGCTGGGTGGCTCAGCCAAGCCTTCCATTTTCT CCCATAGAGTTAGTTGTTCACCACTGGCGGGGGGAGTCCAGCTGTGTGCCTAGTAAAGCA GGAGGGCCCTTCTGTGGATGCCTCCCATGTAGTTCCAGATGGTGGCTGGTGACGGGCAGT CTAAACCCACAGTTAGGGGAGGTGACAGCCACTGTCTATACAGCAGAGCTTCGGAACCTG GAGGACCGGCAGCTTTGTTTAGCTTACCTCGTGCTTTCAAGAAAATCGAGCCACTGCCTA AGAATCAGGAGATTTCACATCAGAATCAGAAGGTCTGGCTTCTCTTGAACAATCAGAAGG TGAGGCAACTCTGATCCGTGTTTTCCAAAGAGGACAATCAGTTGGAACTAAGTAGGAGCT GCCTCTCTTGACAATGCTTATACTCTCTCACCTGGCCTATTCCATTTGTTTGTATTATTT GCCTGGTGTCTGAGGCATCTGAGTCCCTCTTTCCTTTACAAGTTTGTGTTTGAAGGTGAG CAATGTAGAGTTGATCATTCCTTTTTTTAAAAAAAATCATTATGCCTGCAATTTTACCTA GCCACCACTAGGTGGAGAGTAAACGTGTACTTAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCCAGTCCCGCGCCCGGACTTTGCCATCGCCGGGGGCCCGGCCGCGGGAGCGCC CCCTCCTGCGTCCCAGAACCGCAGCCTCAGCTTCAGCCCATGCGGGGGATTGACCGGGAC TGAGGGACCCTCCTGGAAGCATGGAGACTGTGGTGATTGTGGCCATAGGCGTGCTGGCCA CCATCTTTCTGGCCTCATTTGCAGCCTTGGTAGTGGTTTGCAGGCAGCGCTACTGCCGGC CCCGGGACCTCCTGCAGCGCTATGATTCCAAGCCCATCGTGGACCTCATCAGCGCCATGG AGACCCAGTCTGAGCCCTCCGAGCTCGAGCTGGGTGACGTTGTCATCACCAACCCCCACA TCGAGGCCATTCTGGAGAATGAAGACTGGATTGAAGATGCCTCGGGTCTCATGTCCCACT GCATTGCCATCTTGAAGATTTGTCACACTCTGACGGAAAAACTAGTTGCCATGACAATGG GGTCCGGGGCCAAGATGAAGAATTCAGCCAGTGTCAGTGACATCATCGTGGTGGCCAAGC GGATCAGCCCCAGAGTGGACGATGTGGTGAAATCGATGTACCCTCCGTTGGACCCGAAGC TTCTGGATGCCCGGACAACTGCCCTGCTCCTGTCGGTGAGTCATCTCGTGCTGGTGACCA GGAATGCCTGCCACCTGACTGGGGGCCTGGATTGGATCGACCAGTCACTGTCAGCCGCCG AGGAGCACCTGGAAGTCCTTCGAGAAGCAGCCTTGGCTTCCGAGCCAGATAAAGGCCTCC CGGGCCCCGAAGGCTTCCTGCAGGAGCAGTCAGCTATTTAGTGCCTACCGGCCAGGAGCT GATCCCAAAGGGCCAGCCCACTGCCACGGCTGGGTGGCTCAGCCAAGCCTTCCATTTTCT CCCATAGAGTTAGTTGTTCACCACTGGCGGGGGGAGTCCAGCTGTGTGCCTAGTAAAGCA GGAGGGCCCTTCTGTGGATGCCTCCCATGTAGTTCCAGATGGTGGCTGGTGACGGGCAGT CTAAACCCACAGTTAGGGGAGGTGACAGCCACTGTCTATACAGCAGAGCTTCGGAACCTG GAGGACCGGCAGCTTTGTTTAGCTTACCTCGTGCTTTCAAGAAAATCGAGCCACTGCCTA AGAATCAGGAGATTTCACATCAGAATCAGAAGGTCTGGCTTCTCTTGAACAATCAGAAGG TGAGGCAACTCTGATCCGTGTTTTCCAAAGAGGACAATCAGTTGGAACTAAGTAGGAGCT GCCTCTCTTGACAATGCTTATACTCTCTCACCTGGCCTATTCCATTTGTTTGTATTATTT GCCTGGTGTCTGAGGCATCTGAGTCCCTCTTTCCTTTACAAGTTTGTGTTTGAAGGTGAG CAATGTAGAGTTGATCATTCCTTTTTTTAAAAAAAATCATTATGCCTGCAATTTTACCTA GCCACCACTAGGTGGAGAGTAAACGTGTACTTAGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 153-1086, + strand, RNAz p=0.987872 | |
| 153-272, + strand, RNAz p=0.740373 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 153-1086, + strand, RNAz p=0.987872 | |
| 153-272, + strand, RNAz p=0.740373 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 88-272, gnl|bosTau2|chr19 (12179324-12179508) | |
| 88-272, gnl|canFam2|chr9 (43463190-43463337) | |
| 88-272, gnl|danRer3|chr3 (34841937-34842065) | |
| 88-272, gnl|dasNov1|scaffold_51598 (79574-79428) | |
| 88-272, gnl|echTel1|scaffold_112035 (529-669) | |
| 88-272, gnl|fr1|chrUn (17518349-17518208) | |
| 88-272, gnl|Hg17|chr17 (28282603-28282791) | |
| 88-272, gnl|hg17|chr6 (65500324-65500473) | |
| 88-272, gnl|loxAfr1|scaffold_52913 (913-773) | |
| 88-272, gnl|mm7|chr11 (80894265-80894118) | |
| 88-272, gnl|Mm7|chr11 (80894078-80894265) | |
| 88-272, gnl|oryCun1|scaffold_210977 (27995-28143) | |
| 88-272, gnl|panTro1|chr5_random (41448347-41448198) | |
| 88-272, gnl|rheMac2|chr4 (61156229-61156378) | |
| 88-272, gnl|rn3|chr10 (69044274-69044127) | |
| 88-272, gnl|tetNig1|chr3 (13249944-13250077) | |
| 436-553, gnl|bosTau2|chr19 (12184694-12184811) | |
| 436-553, gnl|canFam2|chr9 (43458332-43458444) | |
| 436-553, gnl|canFam2|chr9 (43458468-43458344) | |
| 436-553, gnl|canFam2|chr9 (43458332-43458445) | |
| 436-553, gnl|danRer3|chr3 (34838667-34838854) | |
| 436-553, gnl|danRer3|chr3 (34838856-34838754) | |
| 436-553, gnl|danRer3|chr3 (34838742-34838855) | |
| 436-553, gnl|echTel1|scaffold_312689 (35776-35676) | |
| 436-553, gnl|echTel1|scaffold_312689 (35654-35776) | |
| 436-553, gnl|echTel1|scaffold_312689 (35776-35675) | |
| 436-553, gnl|fr1|chrUn (17519137-17518944) | |
| 436-553, gnl|fr1|chrUn (17518924-17519044) | |
| 436-553, gnl|fr1|chrUn (17519056-17518943) | |
| 436-553, gnl|galGal2|chrUn (32475291-32475407) | |
| 436-553, gnl|hg17|chr14 (58364418-58364534) | |
| 436-553, gnl|hg17|chr17 (28287440-28287564) | |
| 436-553, gnl|Hg17|chr17 (28287461-28287578) | |
| 436-553, gnl|hg17|chr6 (65500046-65500159) | |
| 436-553, gnl|loxAfr1|scaffold_25651 (10399-10508) | |
| 436-553, gnl|loxAfr1|scaffold_25651 (10532-10408) | |
| 436-553, gnl|loxAfr1|scaffold_25651 (10399-10508) | |
| 436-553, gnl|mm7|chr11 (80899195-80899079) | |
| 436-553, gnl|mm7|chr11 (80899055-80899179) | |
| 436-553, gnl|mm7|chr11 (80899191-80899080) | |
| 436-553, gnl|Mm7|chr11 (80899076-80899193) | |
| 436-553, gnl|monDom2|scaffold_44 (10870759-10870633) | |
| 436-553, gnl|panTro1|chr15 (57928140-57928256) | |
| 436-553, gnl|panTro1|chr19 (31797076-31797200) | |
| 436-553, gnl|panTro1|chr5_random (41448627-41448512) | |
| 436-553, gnl|rheMac2|chr16 (28256241-28256365) | |
| 436-553, gnl|rheMac2|chr4 (61155951-61156064) | |
| 436-553, gnl|rheMac2|chr7 (121827757-121827873) | |
| 436-553, gnl|rn3|chr10 (69048209-69048093) | |
| 436-553, gnl|rn3|chr10 (69048069-69048193) | |
| 436-553, gnl|rn3|chr10 (69048205-69048094) | |
| 436-553, gnl|tetNig1|chr3 (13249258-13249450) | |
| 436-553, gnl|tetNig1|chr3 (13249452-13249350) | |
| 436-553, gnl|tetNig1|chr3 (13249338-13249451) | |
| 436-553, gnl|xenTro1|scaffold_162 (777467-777357) | |
| 436-553, gnl|xenTro1|scaffold_162 (777335-777451) | |
| 613-1476, gnl|bosTau2|chr19 (12188941-12189784) | |
| 613-1476, gnl|Hg17|chr17 (28291916-28292771) | |
| 613-1476, gnl|Mm7|chr11 (80902786-80903599) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-272, gnl|bosTau2|chr19 (12179324-12179508) | |
| 88-272, gnl|canFam2|chr9 (43463190-43463337) | |
| 88-272, gnl|danRer3|chr3 (34841937-34842065) | |
| 88-272, gnl|dasNov1|scaffold_51598 (79574-79428) | |
| 88-272, gnl|echTel1|scaffold_112035 (529-669) | |
| 88-272, gnl|fr1|chrUn (17518349-17518208) | |
| 88-272, gnl|Hg17|chr17 (28282603-28282791) | |
| 88-272, gnl|hg17|chr6 (65500324-65500473) | |
| 88-272, gnl|loxAfr1|scaffold_52913 (913-773) | |
| 88-272, gnl|mm7|chr11 (80894265-80894118) | |
| 88-272, gnl|Mm7|chr11 (80894078-80894265) | |
| 88-272, gnl|oryCun1|scaffold_210977 (27995-28143) | |
| 88-272, gnl|panTro1|chr5_random (41448347-41448198) | |
| 88-272, gnl|rheMac2|chr4 (61156229-61156378) | |
| 88-272, gnl|rn3|chr10 (69044274-69044127) | |
| 88-272, gnl|tetNig1|chr3 (13249944-13250077) | |
| 436-553, gnl|bosTau2|chr19 (12184694-12184811) | |
| 436-553, gnl|canFam2|chr9 (43458332-43458444) | |
| 436-553, gnl|canFam2|chr9 (43458468-43458344) | |
| 436-553, gnl|canFam2|chr9 (43458332-43458445) | |
| 436-553, gnl|danRer3|chr3 (34838667-34838854) | |
| 436-553, gnl|danRer3|chr3 (34838856-34838754) | |
| 436-553, gnl|danRer3|chr3 (34838742-34838855) | |
| 436-553, gnl|echTel1|scaffold_312689 (35776-35676) | |
| 436-553, gnl|echTel1|scaffold_312689 (35654-35776) | |
| 436-553, gnl|echTel1|scaffold_312689 (35776-35675) | |
| 436-553, gnl|fr1|chrUn (17519137-17518944) | |
| 436-553, gnl|fr1|chrUn (17518924-17519044) | |
| 436-553, gnl|fr1|chrUn (17519056-17518943) | |
| 436-553, gnl|galGal2|chrUn (32475291-32475407) | |
| 436-553, gnl|hg17|chr14 (58364418-58364534) | |
| 436-553, gnl|hg17|chr17 (28287440-28287564) | |
| 436-553, gnl|Hg17|chr17 (28287461-28287578) | |
| 436-553, gnl|hg17|chr6 (65500046-65500159) | |
| 436-553, gnl|loxAfr1|scaffold_25651 (10399-10508) | |
| 436-553, gnl|loxAfr1|scaffold_25651 (10532-10408) | |
| 436-553, gnl|loxAfr1|scaffold_25651 (10399-10508) | |
| 436-553, gnl|mm7|chr11 (80899195-80899079) | |
| 436-553, gnl|mm7|chr11 (80899055-80899179) | |
| 436-553, gnl|mm7|chr11 (80899191-80899080) | |
| 436-553, gnl|Mm7|chr11 (80899076-80899193) | |
| 436-553, gnl|monDom2|scaffold_44 (10870759-10870633) | |
| 436-553, gnl|panTro1|chr15 (57928140-57928256) | |
| 436-553, gnl|panTro1|chr19 (31797076-31797200) | |
| 436-553, gnl|panTro1|chr5_random (41448627-41448512) | |
| 436-553, gnl|rheMac2|chr16 (28256241-28256365) | |
| 436-553, gnl|rheMac2|chr4 (61155951-61156064) | |
| 436-553, gnl|rheMac2|chr7 (121827757-121827873) | |
| 436-553, gnl|rn3|chr10 (69048209-69048093) | |
| 436-553, gnl|rn3|chr10 (69048069-69048193) | |
| 436-553, gnl|rn3|chr10 (69048205-69048094) | |
| 436-553, gnl|tetNig1|chr3 (13249258-13249450) | |
| 436-553, gnl|tetNig1|chr3 (13249452-13249350) | |
| 436-553, gnl|tetNig1|chr3 (13249338-13249451) | |
| 436-553, gnl|xenTro1|scaffold_162 (777467-777357) | |
| 436-553, gnl|xenTro1|scaffold_162 (777335-777451) | |
| 613-1476, gnl|bosTau2|chr19 (12188941-12189784) | |
| 613-1476, gnl|Hg17|chr17 (28291916-28292771) | |
| 613-1476, gnl|Mm7|chr11 (80902786-80903599) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| ill (0.526778) | |
| eye (0.511509) | |
| pty (0.428143) | |
| cst (0.420109) | |
| col (0.390016) | |
| nje (0.33184) | |
| jej (0.296765) | |
| cga (0.279096) | |
| ova (0.258264) | |
| eru (0.240096) | |
| hea (0.204499) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| lin (0.145603) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| tra (0.123092) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.526778) | |
| eye (0.511509) | |
| pty (0.428143) | |
| cst (0.420109) | |
| col (0.390016) | |
| nje (0.33184) | |
| jej (0.296765) | |
| cga (0.279096) | |
| ova (0.258264) | |
| eru (0.240096) | |
| hea (0.204499) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| lin (0.145603) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| tra (0.123092) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |