Non-Coding RNA Search

Ss1.1-rnje12c_d1.5

Sequence:


               
               CGGTCCCGGCTGATTCTGTGGAAAGGAGATGATCAGAGTCTCTGGGGTGCACGCTCCTGC
CCCACTCAGCAGCACCCAGCTTTAGAAGGCACTCTGAGCAGCCCCTCACCGGCTACAGCC
AAGACACCCTCTCGCTTCAGTCCTTGCTGAGAGCCCCCACCGCCCCTCGCCCCAAACCTC
CACCCGCCCCACCGGACCACAGCCATTCTCTGAAGGGGTAAAGCTCCTTCTGTAGCGTCC
CTCATGGCCAAGTCTCTTCTGCTAGTTCTCTGCTTGTCTCTAGTTATGGCTTTGGGCTGG
GGGCACAGCACTCCCTCCACTGGGGCGACTGAACCCCCAGATGTGCGGACGGTGGCACCC
ACGGAGGACGAGACTCTGCAAAACGAAGCGGACAACCAGGAAAACGTTCTGTCTCAGTTG
CTGGGAGACTATGACAAGGTCAAGGCTGTGTCTGAGGGCTCAGATTGTCAGTGCAAATGT
GTAGTGCGACCCCTGGGCCGAGACGCCTGCCAGAGGATCAATGCAGGGACCTCCAGGAAG
GAAGACTTCTACACTGTGGAAACCATCACCTCAGGCTCATCCTGCAAGTGTGCCTGTGTT
GCACCACCATCGGCCCTCAATCCCTGTGAGGGAGACTTCAGGCTCCAGAAACTTCGGGAG
GCAGACAGCAAGGACTTAAAGCTCTCCACCATCATAGACATGCTGGAAGGAGCTTTCTAT
GGCCTGGATCTCCTGAAGCTGCACTCAGTTACCACCAAACTGGTGGGGCGAGTGGACAAA
CTGGAGGAGGAAGTGTCTAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTCCCGGCTGATTCTGTGGAAAGGAGATGATCAGAGTCTCTGGGGTGCACGCTCCTGC
CCCACTCAGCAGCACCCAGCTTTAGAAGGCACTCTGAGCAGCCCCTCACCGGCTACAGCC
AAGACACCCTCTCGCTTCAGTCCTTGCTGAGAGCCCCCACCGCCCCTCGCCCCAAACCTC
CACCCGCCCCACCGGACCACAGCCATTCTCTGAAGGGGTAAAGCTCCTTCTGTAGCGTCC
CTCATGGCCAAGTCTCTTCTGCTAGTTCTCTGCTTGTCTCTAGTTATGGCTTTGGGCTGG
GGGCACAGCACTCCCTCCACTGGGGCGACTGAACCCCCAGATGTGCGGACGGTGGCACCC
ACGGAGGACGAGACTCTGCAAAACGAAGCGGACAACCAGGAAAACGTTCTGTCTCAGTTG
CTGGGAGACTATGACAAGGTCAAGGCTGTGTCTGAGGGCTCAGATTGTCAGTGCAAATGT
GTAGTGCGACCCCTGGGCCGAGACGCCTGCCAGAGGATCAATGCAGGGACCTCCAGGAAG
GAAGACTTCTACACTGTGGAAACCATCACCTCAGGCTCATCCTGCAAGTGTGCCTGTGTT
GCACCACCATCGGCCCTCAATCCCTGTGAGGGAGACTTCAGGCTCCAGAAACTTCGGGAG
GCAGACAGCAAGGACTTAAAGCTCTCCACCATCATAGACATGCTGGAAGGAGCTTTCTAT
GGCCTGGATCTCCTGAAGCTGCACTCAGTTACCACCAAACTGGTGGGGCGAGTGGACAAA
CTGGAGGAGGAAGTGTCTAAAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61822173|ref|XP_605261.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822173|ref|XP_605261.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               680-790, + strand, RNAz p=0.588028

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               680-790, + strand, RNAz p=0.588028

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC067274, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC067274, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               6-427, gnl|bosTau2|chr3 (18663156-18663562)
               

               
               6-427, gnl|Hg17|chr1 (158725098-158724692)
               

               
               6-427, gnl|Mm7|chr1 (170621190-170621584)
               


               
               680-790, gnl|bosTau2|chr3 (18669039-18669149)
               

               
               680-790, gnl|canFam2|chr38 (23663119-23662967)
               

               
               680-790, gnl|danRer3|chr20 (42417199-42417051)
               

               
               680-790, gnl|dasNov1|scaffold_21173 (13294-13142)
               

               
               680-790, gnl|echTel1|scaffold_320654 (49024-48868)
               

               
               680-790, gnl|fr1|chrUn (63723634-63723748)
               

               
               680-790, gnl|galGal2|chr8 (3728095-3728252)
               

               
               680-790, gnl|hg17|chr1 (158718842-158718994)
               

               
               680-790, gnl|Hg17|chr1 (158718957-158718847)
               

               
               680-790, gnl|mm7|chr1 (170626327-170626170)
               

               
               680-790, gnl|Mm7|chr1 (170626210-170626320)
               

               
               680-790, gnl|monDom2|scaffold_16 (11643469-11643620)
               

               
               680-790, gnl|oryCun1|scaffold_206652 (39628-39781)
               

               
               680-790, gnl|panTro1|chr1 (140855075-140855227)
               

               
               680-790, gnl|rheMac2|chr1 (140543939-140544091)
               

               
               680-790, gnl|rn3|chr13 (86501057-86500900)
               

               
               680-790, gnl|tetNig1|chr1 (10061884-10061755)
               

               
               680-790, gnl|xenTro1|scaffold_160 (643497-643640)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-427, gnl|bosTau2|chr3 (18663156-18663562)
               

               
               6-427, gnl|Hg17|chr1 (158725098-158724692)
               

               
               6-427, gnl|Mm7|chr1 (170621190-170621584)
               


               
               680-790, gnl|bosTau2|chr3 (18669039-18669149)
               

               
               680-790, gnl|canFam2|chr38 (23663119-23662967)
               

               
               680-790, gnl|danRer3|chr20 (42417199-42417051)
               

               
               680-790, gnl|dasNov1|scaffold_21173 (13294-13142)
               

               
               680-790, gnl|echTel1|scaffold_320654 (49024-48868)
               

               
               680-790, gnl|fr1|chrUn (63723634-63723748)
               

               
               680-790, gnl|galGal2|chr8 (3728095-3728252)
               

               
               680-790, gnl|hg17|chr1 (158718842-158718994)
               

               
               680-790, gnl|Hg17|chr1 (158718957-158718847)
               

               
               680-790, gnl|mm7|chr1 (170626327-170626170)
               

               
               680-790, gnl|Mm7|chr1 (170626210-170626320)
               

               
               680-790, gnl|monDom2|scaffold_16 (11643469-11643620)
               

               
               680-790, gnl|oryCun1|scaffold_206652 (39628-39781)
               

               
               680-790, gnl|panTro1|chr1 (140855075-140855227)
               

               
               680-790, gnl|rheMac2|chr1 (140543939-140544091)
               

               
               680-790, gnl|rn3|chr13 (86501057-86500900)
               

               
               680-790, gnl|tetNig1|chr1 (10061884-10061755)
               

               
               680-790, gnl|xenTro1|scaffold_160 (643497-643640)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               csk (0.140746)

	6-427, gnl\|bosTau2\|chr3 (18663156-18663562)
	6-427, gnl\|Hg17\|chr1 (158725098-158724692)
	6-427, gnl\|Mm7\|chr1 (170621190-170621584)

	680-790, gnl\|bosTau2\|chr3 (18669039-18669149)
	680-790, gnl\|canFam2\|chr38 (23663119-23662967)
	680-790, gnl\|danRer3\|chr20 (42417199-42417051)
	680-790, gnl\|dasNov1\|scaffold_21173 (13294-13142)
	680-790, gnl\|echTel1\|scaffold_320654 (49024-48868)
	680-790, gnl\|fr1\|chrUn (63723634-63723748)
	680-790, gnl\|galGal2\|chr8 (3728095-3728252)
	680-790, gnl\|hg17\|chr1 (158718842-158718994)
	680-790, gnl\|Hg17\|chr1 (158718957-158718847)
	680-790, gnl\|mm7\|chr1 (170626327-170626170)
	680-790, gnl\|Mm7\|chr1 (170626210-170626320)
	680-790, gnl\|monDom2\|scaffold_16 (11643469-11643620)
	680-790, gnl\|oryCun1\|scaffold_206652 (39628-39781)
	680-790, gnl\|panTro1\|chr1 (140855075-140855227)
	680-790, gnl\|rheMac2\|chr1 (140543939-140544091)
	680-790, gnl\|rn3\|chr13 (86501057-86500900)
	680-790, gnl\|tetNig1\|chr1 (10061884-10061755)
	680-790, gnl\|xenTro1\|scaffold_160 (643497-643640)