Non-Coding RNA Search

Ss1.1-rnje16c_k14.5

Sequence:


               
               CTCATCTCCAAGATCTTCAAGGGCCTGGCAGCTGACCAGACGGAGGCCCTCTTCGTGGGG
GATGCCATCCTGTCAGTGAATGGGGAAGACCTTTCCTCTGCCACCCATGATGAGGCAGTG
CAAGTCCTGAAGAAGACAGGCAAAGAGGTGGTGCTGGAGGTCAAGTACATGAAGGAGGTC
TCACCATATTTCAAGAACTCTGCCAGTGGGACCTCAGTTGGCTGGGACTCGCCTCCTGCC
TCACCCCTACAGCGGCAGCCTTCCTCCCCTGGCCCCCTACCCCGGGACCTGAGTGATGCC
AAACACGTGTCCTTGAAGATGGCATATGTCTCAAGGAGGTGCACCCCTACTGACCTGGAG
ACCAGGTATCTGGAGATCTGTTCAGCAGATGGCCAAGACACGCTATTCCTGAGGGCCAAG
GACGAGGCTAGCGCAAAGTCATGGGCAGCTGCCATCCAAGCCCAGGTCAACGCTCTGGTG
CCCCGGGTCAAAGACGAGCTGCAGGCGCTGATGTCAGCCACCGGCACAGCCGGGAGCCAG
GACATCAAGCAGATAGGCTGGCTGACTGAGCAGCTGCCCAGTGGGGGTACAGCACCCACC
TTGGCCCTGCTGACTGAAAAGGAGCTGCTCCTCTACAACTGTCTCCCCCAGACCCGTGAG
GCCCTGAGCCGGCCGGCCCGCACCGCCCCGCTCATCACCACCAGGCTGGTGCACTCAGGC
CCCGCCAAGGGCTCGGTGCCCTACGATGCAGAGCTCTCTTTTGCCCTGCGCACGGGCACG
CGCCACGGTGTGGACACTCACCTGTTCAGCGTGGAGTCACCGCAGGAGCTGGCTGCCTGG
ACCCGCCAGCTGGTGGATGGCTGTCACCGGGCCGCTGAGGGTGTGCAGGATGTGTCTACA
GCCTGCACGTGGAACGGCCGGCCCTGCAGCCTCTCGGTGCATATTGACAAAGGCTTCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCTCCAAGATCTTCAAGGGCCTGGCAGCTGACCAGACGGAGGCCCTCTTCGTGGGG
GATGCCATCCTGTCAGTGAATGGGGAAGACCTTTCCTCTGCCACCCATGATGAGGCAGTG
CAAGTCCTGAAGAAGACAGGCAAAGAGGTGGTGCTGGAGGTCAAGTACATGAAGGAGGTC
TCACCATATTTCAAGAACTCTGCCAGTGGGACCTCAGTTGGCTGGGACTCGCCTCCTGCC
TCACCCCTACAGCGGCAGCCTTCCTCCCCTGGCCCCCTACCCCGGGACCTGAGTGATGCC
AAACACGTGTCCTTGAAGATGGCATATGTCTCAAGGAGGTGCACCCCTACTGACCTGGAG
ACCAGGTATCTGGAGATCTGTTCAGCAGATGGCCAAGACACGCTATTCCTGAGGGCCAAG
GACGAGGCTAGCGCAAAGTCATGGGCAGCTGCCATCCAAGCCCAGGTCAACGCTCTGGTG
CCCCGGGTCAAAGACGAGCTGCAGGCGCTGATGTCAGCCACCGGCACAGCCGGGAGCCAG
GACATCAAGCAGATAGGCTGGCTGACTGAGCAGCTGCCCAGTGGGGGTACAGCACCCACC
TTGGCCCTGCTGACTGAAAAGGAGCTGCTCCTCTACAACTGTCTCCCCCAGACCCGTGAG
GCCCTGAGCCGGCCGGCCCGCACCGCCCCGCTCATCACCACCAGGCTGGTGCACTCAGGC
CCCGCCAAGGGCTCGGTGCCCTACGATGCAGAGCTCTCTTTTGCCCTGCGCACGGGCACG
CGCCACGGTGTGGACACTCACCTGTTCAGCGTGGAGTCACCGCAGGAGCTGGCTGCCTGG
ACCCGCCAGCTGGTGGATGGCTGTCACCGGGCCGCTGAGGGTGTGCAGGATGTGTCTACA
GCCTGCACGTGGAACGGCCGGCCCTGCAGCCTCTCGGTGCATATTGACAAAGGCTTCACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62646105|ref|XP_342549.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62646105|ref|XP_342549.2|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               160-368, gnl|bosTau2|chr13 (43561991-43562199)
               

               
               160-368, gnl|Hg17|chr20 (31469391-31469183)
               

               
               160-368, gnl|Mm7|chr2 (154124843-154124635)
               


               
               698-901, gnl|bosTau2|chr13 (43568216-43568419)
               

               
               698-901, gnl|Hg17|chr20 (31461805-31461602)
               

               
               698-901, gnl|Mm7|chr2 (154119069-154118866)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-368, gnl|bosTau2|chr13 (43561991-43562199)
               

               
               160-368, gnl|Hg17|chr20 (31469391-31469183)
               

               
               160-368, gnl|Mm7|chr2 (154124843-154124635)
               


               
               698-901, gnl|bosTau2|chr13 (43568216-43568419)
               

               
               698-901, gnl|Hg17|chr20 (31461805-31461602)
               

               
               698-901, gnl|Mm7|chr2 (154119069-154118866)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               nje (0.16592)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               nje (0.16592)

	160-368, gnl\|bosTau2\|chr13 (43561991-43562199)
	160-368, gnl\|Hg17\|chr20 (31469391-31469183)
	160-368, gnl\|Mm7\|chr2 (154124843-154124635)

	698-901, gnl\|bosTau2\|chr13 (43568216-43568419)
	698-901, gnl\|Hg17\|chr20 (31461805-31461602)
	698-901, gnl\|Mm7\|chr2 (154119069-154118866)