Non-Coding RNA Search

Ss1.1-rnje17c_d20.5

Sequence:


               
               AGAACTTCAGCCATCCCTACTGCCTCAGGCTCCTCTGCGAGCAGATCCTCAGGGACACCT
TCGCAGAATCCTGTATCCGGATCTCCCAGGACGAGCGGCGCAAAATGAAGGACCTGTTAG
AGGACCTGGAGGTGGGGCTGGACTCGCTGGACACAGCTGAGGACAGCGTCAAGAAGCGTA
TCGTGGTGGCGGCCAGGGACAACTGGGCCAATTACTTCTCACGCATCTTCCCGGTCTCGG
GTGAGAGCAGCAGCGACGTGCAGCTGCTGGCTGTGTCCCATCGGGGGCTGAGACTGCTCA
AGGTGACCCAAGGCCCCAGCTTCCACCCCGACCAGCTGAAGACTCTCTGCTCATACAGCT
TTGCTGAGGTGCTGGGCGTGGACTGCCCGGCTGACTCCACCCTGGAGCTGTCGCTGAAGG
GGGAGCAGCTGGTGCTGCACACGGTCCGGGCAAGAGCCGTCAAGGCCATGGTCGAGCTGT
TCCTGAGCGAGCTCAAAAAGGACTCGGGCTACGTCATTGCCCTGCGAAGCTACATCACGG
ATGACCACAGCCTCCTCAGCTTCCAACGGGGGGACCTCATCAAGCTGTTGCCAGTGGCCA
GTCTGGAGCCAGGCTGGCAGTTTGGCTCCACCGGGGGCCGTTCTGGACTCTTCCCTGCTG
ACACCGTGCAGCCGGCCGCCGCTCCAGACTTCTCCTTCTCGATGGAGCAGAGGAGCGGCC
GGCGCAAGAGTCAGCTGCAGCGCGGCGAGTGGGATAGGGCGTCGGAGGTGAGGAAGACGG
GAGAGGCCGAGGCGAGGCCTAAGTAGGCCTCAAGGAAGGAAAGGGCTCGATCGGCCCCCG
AGCGGCCAAGGACCACCCCCCGCCTGGTGGGCAGCGCTTGGTCTGATGCGGTCTCTGCCC
GCTCCATTTCTTGCCCTGTCTCCCCAGCAAGACTGTGAGCTCCCTGCGGGCAGGGGCTGG
GCGGTCTGCCTCTCGTGCATCCCTCGTGGTACCTAGTGCTGCTCAATAAACGGCTCGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACTTCAGCCATCCCTACTGCCTCAGGCTCCTCTGCGAGCAGATCCTCAGGGACACCT
TCGCAGAATCCTGTATCCGGATCTCCCAGGACGAGCGGCGCAAAATGAAGGACCTGTTAG
AGGACCTGGAGGTGGGGCTGGACTCGCTGGACACAGCTGAGGACAGCGTCAAGAAGCGTA
TCGTGGTGGCGGCCAGGGACAACTGGGCCAATTACTTCTCACGCATCTTCCCGGTCTCGG
GTGAGAGCAGCAGCGACGTGCAGCTGCTGGCTGTGTCCCATCGGGGGCTGAGACTGCTCA
AGGTGACCCAAGGCCCCAGCTTCCACCCCGACCAGCTGAAGACTCTCTGCTCATACAGCT
TTGCTGAGGTGCTGGGCGTGGACTGCCCGGCTGACTCCACCCTGGAGCTGTCGCTGAAGG
GGGAGCAGCTGGTGCTGCACACGGTCCGGGCAAGAGCCGTCAAGGCCATGGTCGAGCTGT
TCCTGAGCGAGCTCAAAAAGGACTCGGGCTACGTCATTGCCCTGCGAAGCTACATCACGG
ATGACCACAGCCTCCTCAGCTTCCAACGGGGGGACCTCATCAAGCTGTTGCCAGTGGCCA
GTCTGGAGCCAGGCTGGCAGTTTGGCTCCACCGGGGGCCGTTCTGGACTCTTCCCTGCTG
ACACCGTGCAGCCGGCCGCCGCTCCAGACTTCTCCTTCTCGATGGAGCAGAGGAGCGGCC
GGCGCAAGAGTCAGCTGCAGCGCGGCGAGTGGGATAGGGCGTCGGAGGTGAGGAAGACGG
GAGAGGCCGAGGCGAGGCCTAAGTAGGCCTCAAGGAAGGAAAGGGCTCGATCGGCCCCCG
AGCGGCCAAGGACCACCCCCCGCCTGGTGGGCAGCGCTTGGTCTGATGCGGTCTCTGCCC
GCTCCATTTCTTGCCCTGTCTCCCCAGCAAGACTGTGAGCTCCCTGCGGGCAGGGGCTGG
GCGGTCTGCCTCTCGTGCATCCCTCGTGGTACCTAGTGCTGCTCAATAAACGGCTCGTGA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               356-501, - strand, RNAz p=0.938322
               

               
               383-501, + strand, RNAz p=0.989811
               

               
               650-751, - strand, RNAz p=0.938636

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-501, - strand, RNAz p=0.938322
               

               
               383-501, + strand, RNAz p=0.989811
               

               
               650-751, - strand, RNAz p=0.938636

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               356-501, gnl|bosTau2|chr19 (51490546-51490401)
               

               
               356-501, gnl|canFam2|chr9 (7944221-7944072)
               

               
               356-501, gnl|fr1|chrUn (145836092-145836237)
               

               
               356-501, gnl|galGal2|chr18 (4627710-4627548)
               

               
               356-501, gnl|hg17|chr17 (71127554-71127719)
               

               
               356-501, gnl|Hg17|chr17 (71127551-71127696)
               

               
               356-501, gnl|loxAfr1|scaffold_11903 (47651-47495)
               

               
               356-501, gnl|mm7|chr11 (115995629-115995778)
               

               
               356-501, gnl|Mm7|chr11 (115995626-115995771)
               

               
               356-501, gnl|monDom2|scaffold_18 (33318736-33318901)
               

               
               356-501, gnl|oryCun1|scaffold_211044 (62698-62538)
               

               
               356-501, gnl|panTro1|chr19 (74482225-74482390)
               

               
               356-501, gnl|rheMac2|chr16 (70929280-70929445)
               

               
               356-501, gnl|rn3|chr10 (106007580-106007728)
               

               
               356-501, gnl|tetNig1|chrUn_random (84242363-84242508)
               


               
               611-997, gnl|bosTau2|chr19 (51489979-51489588)
               

               
               611-997, gnl|Hg17|chr17 (71128140-71128546)
               

               
               611-997, gnl|Mm7|chr11 (115996105-115996442)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               356-501, gnl|bosTau2|chr19 (51490546-51490401)
               

               
               356-501, gnl|canFam2|chr9 (7944221-7944072)
               

               
               356-501, gnl|fr1|chrUn (145836092-145836237)
               

               
               356-501, gnl|galGal2|chr18 (4627710-4627548)
               

               
               356-501, gnl|hg17|chr17 (71127554-71127719)
               

               
               356-501, gnl|Hg17|chr17 (71127551-71127696)
               

               
               356-501, gnl|loxAfr1|scaffold_11903 (47651-47495)
               

               
               356-501, gnl|mm7|chr11 (115995629-115995778)
               

               
               356-501, gnl|Mm7|chr11 (115995626-115995771)
               

               
               356-501, gnl|monDom2|scaffold_18 (33318736-33318901)
               

               
               356-501, gnl|oryCun1|scaffold_211044 (62698-62538)
               

               
               356-501, gnl|panTro1|chr19 (74482225-74482390)
               

               
               356-501, gnl|rheMac2|chr16 (70929280-70929445)
               

               
               356-501, gnl|rn3|chr10 (106007580-106007728)
               

               
               356-501, gnl|tetNig1|chrUn_random (84242363-84242508)
               


               
               611-997, gnl|bosTau2|chr19 (51489979-51489588)
               

               
               611-997, gnl|Hg17|chr17 (71128140-71128546)
               

               
               611-997, gnl|Mm7|chr11 (115996105-115996442)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               nje (0.49776)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.49776)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               eje (0.0988338)

	356-501, - strand, RNAz p=0.938322
	383-501, + strand, RNAz p=0.989811
	650-751, - strand, RNAz p=0.938636

	356-501, gnl\|bosTau2\|chr19 (51490546-51490401)
	356-501, gnl\|canFam2\|chr9 (7944221-7944072)
	356-501, gnl\|fr1\|chrUn (145836092-145836237)
	356-501, gnl\|galGal2\|chr18 (4627710-4627548)
	356-501, gnl\|hg17\|chr17 (71127554-71127719)
	356-501, gnl\|Hg17\|chr17 (71127551-71127696)
	356-501, gnl\|loxAfr1\|scaffold_11903 (47651-47495)
	356-501, gnl\|mm7\|chr11 (115995629-115995778)
	356-501, gnl\|Mm7\|chr11 (115995626-115995771)
	356-501, gnl\|monDom2\|scaffold_18 (33318736-33318901)
	356-501, gnl\|oryCun1\|scaffold_211044 (62698-62538)
	356-501, gnl\|panTro1\|chr19 (74482225-74482390)
	356-501, gnl\|rheMac2\|chr16 (70929280-70929445)
	356-501, gnl\|rn3\|chr10 (106007580-106007728)
	356-501, gnl\|tetNig1\|chrUn_random (84242363-84242508)

	611-997, gnl\|bosTau2\|chr19 (51489979-51489588)
	611-997, gnl\|Hg17\|chr17 (71128140-71128546)
	611-997, gnl\|Mm7\|chr11 (115996105-115996442)