Non-Coding RNA Search

Ss1.1-rnje17c_g12.5

Sequence:


               
               CGCGGCCGCCGCGGGGGAGAGATGACTGCGGAGCGACCCGGCGCAGTGCCCCTGGGCAGA
CCCGGGAGACCGCCTATGCTGGGATTAGGGGAAGCCTATAGGGCCCAGGTATTTGCCTCG
ATCTTCCTGCTGCTGTTGTCTCCGGCAGGAGTCGGAGCCAGGGCAAAGAACGACTTCAGT
CTGGTGCACCCGCTGGTGACCATGGAGCAACTGCTGTGGGTGAGCGGAAAACAGATCGGT
TCTGTGGACACCTTCCGCATCCCACTCATCACCACCACTCCTCGAGGCACCCTCCTTGCC
TTCGCTGAGGCCAGGAAAATGTCAGCATCGGATAAAGGCGCTAAATTCATTGCTCTGTGG
AGATCCATGGACCAGGGCAGCACATGGTCTCCGACAGCTTTCATTGTGGATGATGGGGAG
ACCCCAGATGGTCTGAACTTGGGGGCAGTGGTGAGCGATACAACGACAGGCGTGGTCTTC
CTTTTCTACTCCCTCTGTGCTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCCGCCGCGGGGGAGAGATGACTGCGGAGCGACCCGGCGCAGTGCCCCTGGGCAGA
CCCGGGAGACCGCCTATGCTGGGATTAGGGGAAGCCTATAGGGCCCAGGTATTTGCCTCG
ATCTTCCTGCTGCTGTTGTCTCCGGCAGGAGTCGGAGCCAGGGCAAAGAACGACTTCAGT
CTGGTGCACCCGCTGGTGACCATGGAGCAACTGCTGTGGGTGAGCGGAAAACAGATCGGT
TCTGTGGACACCTTCCGCATCCCACTCATCACCACCACTCCTCGAGGCACCCTCCTTGCC
TTCGCTGAGGCCAGGAAAATGTCAGCATCGGATAAAGGCGCTAAATTCATTGCTCTGTGG
AGATCCATGGACCAGGGCAGCACATGGTCTCCGACAGCTTTCATTGTGGATGATGGGGAG
ACCCCAGATGGTCTGAACTTGGGGGCAGTGGTGAGCGATACAACGACAGGCGTGGTCTTC
CTTTTCTACTCCCTCTGTGCTCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60202577|gb|AAX14675.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60202577|gb|AAX14675.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               183-377, - strand, RNAz p=0.824643
               

               
               223-339, + strand, RNAz p=0.622993

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-377, - strand, RNAz p=0.824643
               

               
               223-339, + strand, RNAz p=0.622993

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               183-377, gnl|bosTau2|chr23 (23465771-23465577)
               

               
               183-377, gnl|canFam2|chr12 (4329719-4329862)
               

               
               183-377, gnl|danRer3|chrNA (56312749-56312892)
               

               
               183-377, gnl|echTel1|scaffold_299490 (43745-43888)
               

               
               183-377, gnl|fr1|chrUn (267126679-267126817)
               

               
               183-377, gnl|hg17|chr6 (31937748-31937891)
               

               
               183-377, gnl|Hg17|chr6 (31937948-31937754)
               

               
               183-377, gnl|mm7|chr17 (33029208-33029064)
               

               
               183-377, gnl|Mm7|chr17 (33029005-33029199)
               

               
               183-377, gnl|monDom2|scaffold_42 (17499282-17499147)
               

               
               183-377, gnl|panTro1|chr5 (32342671-32342814)
               

               
               183-377, gnl|rheMac2|chr4 (31511787-31511930)
               

               
               183-377, gnl|rn3|chr20 (4003139-4003282)
               

               
               183-377, gnl|tetNig1|chrUn_random (100674121-100674261)
               

               
               183-377, gnl|xenTro1|scaffold_895 (22389-22532)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-377, gnl|bosTau2|chr23 (23465771-23465577)
               

               
               183-377, gnl|canFam2|chr12 (4329719-4329862)
               

               
               183-377, gnl|danRer3|chrNA (56312749-56312892)
               

               
               183-377, gnl|echTel1|scaffold_299490 (43745-43888)
               

               
               183-377, gnl|fr1|chrUn (267126679-267126817)
               

               
               183-377, gnl|hg17|chr6 (31937748-31937891)
               

               
               183-377, gnl|Hg17|chr6 (31937948-31937754)
               

               
               183-377, gnl|mm7|chr17 (33029208-33029064)
               

               
               183-377, gnl|Mm7|chr17 (33029005-33029199)
               

               
               183-377, gnl|monDom2|scaffold_42 (17499282-17499147)
               

               
               183-377, gnl|panTro1|chr5 (32342671-32342814)
               

               
               183-377, gnl|rheMac2|chr4 (31511787-31511930)
               

               
               183-377, gnl|rn3|chr20 (4003139-4003282)
               

               
               183-377, gnl|tetNig1|chrUn_random (100674121-100674261)
               

               
               183-377, gnl|xenTro1|scaffold_895 (22389-22532)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.33184)
               

               
               mcp (0.170648)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               mcp (0.170648)

	183-377, - strand, RNAz p=0.824643
	223-339, + strand, RNAz p=0.622993

	183-377, gnl\|bosTau2\|chr23 (23465771-23465577)
	183-377, gnl\|canFam2\|chr12 (4329719-4329862)
	183-377, gnl\|danRer3\|chrNA (56312749-56312892)
	183-377, gnl\|echTel1\|scaffold_299490 (43745-43888)
	183-377, gnl\|fr1\|chrUn (267126679-267126817)
	183-377, gnl\|hg17\|chr6 (31937748-31937891)
	183-377, gnl\|Hg17\|chr6 (31937948-31937754)
	183-377, gnl\|mm7\|chr17 (33029208-33029064)
	183-377, gnl\|Mm7\|chr17 (33029005-33029199)
	183-377, gnl\|monDom2\|scaffold_42 (17499282-17499147)
	183-377, gnl\|panTro1\|chr5 (32342671-32342814)
	183-377, gnl\|rheMac2\|chr4 (31511787-31511930)
	183-377, gnl\|rn3\|chr20 (4003139-4003282)
	183-377, gnl\|tetNig1\|chrUn_random (100674121-100674261)
	183-377, gnl\|xenTro1\|scaffold_895 (22389-22532)