Ss1.1-rnje17c_j12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGGCATTTTTTGTTGACCACAAACTCCCGGACCACACTTTCATTGACCCCCGGCTCCC ACTCCAGAAGCAGCAGACCCACGAGTGCGCTGGTGCATCGACAGCATCTGACGAGGCAGC GCAGCCACAGTGCAGGCGAGGTGGGAGAAGATTCTCGACATGCCGGACCACCAGTTCTTC CCAGGCCGTCGAGTACGTTCAACACAGTCAGCAGGCCGCAGTACCAGGACATGGTTCCAG TGGCTTACAATGACAAGATTGTTGCATTTCTTCGCCAACCCAACATCTTTGAAATTCTAC AGGAGCGTCAACCTGATCTTACCAGGAATCACTCACTCAGGGAGAAGATCCAATTTATCC GAACTGAAGGGACCCCAGGATTGGTGCGTCTTTCAAGTGATGCAGACCTTGTTATGTTGC TAAGTTTATTTGAAGAAGAGATAATGTCATACGTGCCTCCACATGCCTTACTCCATCCCA GCTACTGTCAGTCCCCACGTGGCTCCCCTGTGTCCTCTCCCCAGAACTCGCCAGGTACTC AGCGTGCCAACGCCCGGGCTCCCGCCCCTTACAAGCGAGACTTTGAAGCCAAACTGAGGA ATTTTTACAGGAAGTTAGAGACTAAAGGATATGGACAAGGCCCAGGGAAATTAAAGTTAA TTATCAGAAGAGATCACTTGCTCGAAGATGCTTTTAATCAGATTATGGGCTATTCCAGAA AAGACCTGCAGAGAAATAAGCTGTACGTCACATTTGTCGGGGAGGAAGGGCTGGATTACA GTGGACCTTCCAGAGAGTTTTTCTTCCTGGTATCCAGAGAGCTCTTTAACCCATATTACG GCTTATTTGAATATTCAGCCAATGACACATACACAGTACAAATAAGTCCCATGTCTGCTT TTGTAGACAATCACCATGAATGGTTCCGGTTCAGTGGTAGGATCCTTGGTCTTGCGCTGA TTCACCAGTATTTGTTGGATGCCTTCTTCACGCGGCCCTTCTATAAGGCTCTTCTCAGAA TTCTGTGTGACCTGAGTGATCTAGAATACCTTGATGAGGAGTTCCACCAGAGCCTGCAGT GGATGAAAGACAATGATATCCATGACATTCTGGACCTCACGTTCACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGGCATTTTTTGTTGACCACAAACTCCCGGACCACACTTTCATTGACCCCCGGCTCCC ACTCCAGAAGCAGCAGACCCACGAGTGCGCTGGTGCATCGACAGCATCTGACGAGGCAGC GCAGCCACAGTGCAGGCGAGGTGGGAGAAGATTCTCGACATGCCGGACCACCAGTTCTTC CCAGGCCGTCGAGTACGTTCAACACAGTCAGCAGGCCGCAGTACCAGGACATGGTTCCAG TGGCTTACAATGACAAGATTGTTGCATTTCTTCGCCAACCCAACATCTTTGAAATTCTAC AGGAGCGTCAACCTGATCTTACCAGGAATCACTCACTCAGGGAGAAGATCCAATTTATCC GAACTGAAGGGACCCCAGGATTGGTGCGTCTTTCAAGTGATGCAGACCTTGTTATGTTGC TAAGTTTATTTGAAGAAGAGATAATGTCATACGTGCCTCCACATGCCTTACTCCATCCCA GCTACTGTCAGTCCCCACGTGGCTCCCCTGTGTCCTCTCCCCAGAACTCGCCAGGTACTC AGCGTGCCAACGCCCGGGCTCCCGCCCCTTACAAGCGAGACTTTGAAGCCAAACTGAGGA ATTTTTACAGGAAGTTAGAGACTAAAGGATATGGACAAGGCCCAGGGAAATTAAAGTTAA TTATCAGAAGAGATCACTTGCTCGAAGATGCTTTTAATCAGATTATGGGCTATTCCAGAA AAGACCTGCAGAGAAATAAGCTGTACGTCACATTTGTCGGGGAGGAAGGGCTGGATTACA GTGGACCTTCCAGAGAGTTTTTCTTCCTGGTATCCAGAGAGCTCTTTAACCCATATTACG GCTTATTTGAATATTCAGCCAATGACACATACACAGTACAAATAAGTCCCATGTCTGCTT TTGTAGACAATCACCATGAATGGTTCCGGTTCAGTGGTAGGATCCTTGGTCTTGCGCTGA TTCACCAGTATTTGTTGGATGCCTTCTTCACGCGGCCCTTCTATAAGGCTCTTCTCAGAA TTCTGTGTGACCTGAGTGATCTAGAATACCTTGATGAGGAGTTCCACCAGAGCCTGCAGT GGATGAAAGACAATGATATCCATGACATTCTGGACCTCACGTTCACAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 766-924, + strand, RNAz p=0.851076 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 766-924, + strand, RNAz p=0.851076 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 533-657, gnl|bosTau2|chr2 (42804267-42804143) | |
| 533-657, gnl|canFam2|chr37 (8894187-8894338) | |
| 533-657, gnl|danRer3|chr7 (50693540-50693691) | |
| 533-657, gnl|dasNov1|scaffold_2356 (23742-23860) | |
| 533-657, gnl|echTel1|scaffold_323320 (798-666) | |
| 533-657, gnl|fr1|chrUn (188886597-188886737) | |
| 533-657, gnl|galGal2|chr7 (10673189-10673325) | |
| 533-657, gnl|hg17|chr2 (196932294-196932445) | |
| 533-657, gnl|Hg17|chr2 (196932436-196932312) | |
| 533-657, gnl|loxAfr1|scaffold_83 (226871-226735) | |
| 533-657, gnl|mm7|chr1 (54086905-54087055) | |
| 533-657, gnl|Mm7|chr1 (54087047-54086923) | |
| 533-657, gnl|monDom2|scaffold_2 (105802519-105802670) | |
| 533-657, gnl|oryCun1|scaffold_193760 (11589-11725) | |
| 533-657, gnl|panTro1|chr13 (86850602-86850753) | |
| 533-657, gnl|rheMac2|chr12 (59880324-59880475) | |
| 533-657, gnl|rn3|chr9 (52669350-52669500) | |
| 533-657, gnl|tetNig1|chr3 (2896305-2896440) | |
| 766-924, gnl|bosTau2|chr2 (42792373-42792215) | |
| 766-924, gnl|canFam2|chr37 (8882274-8882445) | |
| 766-924, gnl|danRer3|chr7 (50691461-50691632) | |
| 766-924, gnl|dasNov1|scaffold_641 (90194-90023) | |
| 766-924, gnl|echTel1|scaffold_276495 (66153-66321) | |
| 766-924, gnl|fr1|chrUn (188885654-188885815) | |
| 766-924, gnl|galGal2|chr7 (10667196-10667365) | |
| 766-924, gnl|hg17|chr2 (196918328-196918500) | |
| 766-924, gnl|Hg17|chr2 (196918488-196918330) | |
| 766-924, gnl|loxAfr1|scaffold_48342 (4166-4337) | |
| 766-924, gnl|mm7|chr1 (54074362-54074533) | |
| 766-924, gnl|Mm7|chr1 (54074522-54074364) | |
| 766-924, gnl|monDom2|scaffold_2 (105785638-105785809) | |
| 766-924, gnl|oryCun1|scaffold_182803 (58642-58796) | |
| 766-924, gnl|panTro1|chr13 (86836605-86836777) | |
| 766-924, gnl|rheMac2|chr12 (59867767-59867939) | |
| 766-924, gnl|rn3|chr9 (52656818-52656989) | |
| 766-924, gnl|tetNig1|chr3 (2895852-2896005) | |
| 766-924, gnl|xenTro1|scaffold_616 (31259-31088) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 533-657, gnl|bosTau2|chr2 (42804267-42804143) | |
| 533-657, gnl|canFam2|chr37 (8894187-8894338) | |
| 533-657, gnl|danRer3|chr7 (50693540-50693691) | |
| 533-657, gnl|dasNov1|scaffold_2356 (23742-23860) | |
| 533-657, gnl|echTel1|scaffold_323320 (798-666) | |
| 533-657, gnl|fr1|chrUn (188886597-188886737) | |
| 533-657, gnl|galGal2|chr7 (10673189-10673325) | |
| 533-657, gnl|hg17|chr2 (196932294-196932445) | |
| 533-657, gnl|Hg17|chr2 (196932436-196932312) | |
| 533-657, gnl|loxAfr1|scaffold_83 (226871-226735) | |
| 533-657, gnl|mm7|chr1 (54086905-54087055) | |
| 533-657, gnl|Mm7|chr1 (54087047-54086923) | |
| 533-657, gnl|monDom2|scaffold_2 (105802519-105802670) | |
| 533-657, gnl|oryCun1|scaffold_193760 (11589-11725) | |
| 533-657, gnl|panTro1|chr13 (86850602-86850753) | |
| 533-657, gnl|rheMac2|chr12 (59880324-59880475) | |
| 533-657, gnl|rn3|chr9 (52669350-52669500) | |
| 533-657, gnl|tetNig1|chr3 (2896305-2896440) | |
| 766-924, gnl|bosTau2|chr2 (42792373-42792215) | |
| 766-924, gnl|canFam2|chr37 (8882274-8882445) | |
| 766-924, gnl|danRer3|chr7 (50691461-50691632) | |
| 766-924, gnl|dasNov1|scaffold_641 (90194-90023) | |
| 766-924, gnl|echTel1|scaffold_276495 (66153-66321) | |
| 766-924, gnl|fr1|chrUn (188885654-188885815) | |
| 766-924, gnl|galGal2|chr7 (10667196-10667365) | |
| 766-924, gnl|hg17|chr2 (196918328-196918500) | |
| 766-924, gnl|Hg17|chr2 (196918488-196918330) | |
| 766-924, gnl|loxAfr1|scaffold_48342 (4166-4337) | |
| 766-924, gnl|mm7|chr1 (54074362-54074533) | |
| 766-924, gnl|Mm7|chr1 (54074522-54074364) | |
| 766-924, gnl|monDom2|scaffold_2 (105785638-105785809) | |
| 766-924, gnl|oryCun1|scaffold_182803 (58642-58796) | |
| 766-924, gnl|panTro1|chr13 (86836605-86836777) | |
| 766-924, gnl|rheMac2|chr12 (59867767-59867939) | |
| 766-924, gnl|rn3|chr9 (52656818-52656989) | |
| 766-924, gnl|tetNig1|chr3 (2895852-2896005) | |
| 766-924, gnl|xenTro1|scaffold_616 (31259-31088) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| spl (0.143184) |