Ss1.1-rnje18c_n9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCGCTGTCATCTTCACGGCAGAGGAGAAGAAGCCCAAGGACTCCTCCTGCAGGGTCTG CTGCCGCTGTGGCACTGAGTACCTTGTGTCCTCCTCTGGGCGCTGTGTGCGCGACGAGGA GTGTTACTACCACTGGGGACGGCTCCGCCGGAACCGAGTGGCTGGTGGCTGGGAGACTCA GTACATGTGCTGCTCGGCTGCCATCGGCTCCACCGGCTGTCAGGTTGCCAAGCAACACGT GCAGGATGGCCGGAAGGAAAGCCTTGAAGGGTTTGTGAAGACTTTTGAGAAAGAACTGTC AGGAGATGCGCACCCAGGAATCTATGCCCTTGACTGTGAAATGTCCTACACCACGTACGG CCTGGAGCTGACGCGGGTCACGGTGGTGGACACAGACCTACAAGTTGTGTACGACACCTT CGTCAGGCCGGACAACGAGATCGTCGACTATAACACCAGGTTTTCAGGGGTGACTGAGGC TGACCTCGCAGACACAAGCATCTCACTCCGGGATGTCCAGGCCGTGCTGCTCAGCATGTT CTGTTCGGACACCATCCTCATTGGCCACAGGCTGGAGAGTGATCTCCTGGCCTTGAAGGT TATCCACAGCAGGGGGGGGGACACGTTCGTGTTATTCCCGCATCGCCTGGGCCTCCCGTA CAAGCGCTCCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCGCTGTCATCTTCACGGCAGAGGAGAAGAAGCCCAAGGACTCCTCCTGCAGGGTCTG CTGCCGCTGTGGCACTGAGTACCTTGTGTCCTCCTCTGGGCGCTGTGTGCGCGACGAGGA GTGTTACTACCACTGGGGACGGCTCCGCCGGAACCGAGTGGCTGGTGGCTGGGAGACTCA GTACATGTGCTGCTCGGCTGCCATCGGCTCCACCGGCTGTCAGGTTGCCAAGCAACACGT GCAGGATGGCCGGAAGGAAAGCCTTGAAGGGTTTGTGAAGACTTTTGAGAAAGAACTGTC AGGAGATGCGCACCCAGGAATCTATGCCCTTGACTGTGAAATGTCCTACACCACGTACGG CCTGGAGCTGACGCGGGTCACGGTGGTGGACACAGACCTACAAGTTGTGTACGACACCTT CGTCAGGCCGGACAACGAGATCGTCGACTATAACACCAGGTTTTCAGGGGTGACTGAGGC TGACCTCGCAGACACAAGCATCTCACTCCGGGATGTCCAGGCCGTGCTGCTCAGCATGTT CTGTTCGGACACCATCCTCATTGGCCACAGGCTGGAGAGTGATCTCCTGGCCTTGAAGGT TATCCACAGCAGGGGGGGGGACACGTTCGTGTTATTCCCGCATCGCCTGGGCCTCCCGTA CAAGCGCTCCCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 121 entry(ies) | More info |
| Aligned organism(s): 121 entry(ies) | Help | Less info |
| 45-158, gnl|bosTau2|chr7 (28271463-28271576) | |
| 45-158, gnl|canFam2|chr20 (60279010-60278908) | |
| 45-158, gnl|canFam2|chr20 (60278908-60279007) | |
| 45-158, gnl|canFam2|chr20 (60279030-60278896) | |
| 45-158, gnl|canFam2|chr20 (60279010-60278922) | |
| 45-158, gnl|danRer3|chr8 (11839227-11839322) | |
| 45-158, gnl|danRer3|chr8 (11839211-11839335) | |
| 45-158, gnl|dasNov1|scaffold_38534 (12914-12812) | |
| 45-158, gnl|dasNov1|scaffold_38534 (12812-12911) | |
| 45-158, gnl|dasNov1|scaffold_38534 (12922-12812) | |
| 45-158, gnl|dasNov1|scaffold_38534 (12914-12826) | |
| 45-158, gnl|echTel1|scaffold_247033 (3985-4087) | |
| 45-158, gnl|echTel1|scaffold_247033 (4087-3988) | |
| 45-158, gnl|echTel1|scaffold_247033 (3965-4098) | |
| 45-158, gnl|echTel1|scaffold_247033 (3985-4073) | |
| 45-158, gnl|fr1|chrUn (126824024-126823967) | |
| 45-158, gnl|fr1|chrUn (126823885-126823754) | |
| 45-158, gnl|fr1|chrUn (126824024-126823967) | |
| 45-158, gnl|galGal2|chr28 (1203645-1203517) | |
| 45-158, gnl|hg17|chr19 (1769473-1769607) | |
| 45-158, gnl|Hg17|chr19 (1769594-1769481) | |
| 45-158, gnl|hg17|chr7 (55186241-55186336) | |
| 45-158, gnl|hg17|chr8 (86742907-86743009) | |
| 45-158, gnl|hg17|chr8_random (588254-588342) | |
| 45-158, gnl|mm7|chr10 (80333197-80333299) | |
| 45-158, gnl|mm7|chr10 (80333177-80333311) | |
| 45-158, gnl|mm7|chr10 (80333197-80333285) | |
| 45-158, gnl|Mm7|chr10 (80333298-80333185) | |
| 45-158, gnl|mm7|chrUn_random (9598233-9598138) | |
| 45-158, gnl|monDom2|scaffold_119 (691859-691979) | |
| 45-158, gnl|oryCun1|scaffold_177027 (32775-32877) | |
| 45-158, gnl|oryCun1|scaffold_177027 (32877-32782) | |
| 45-158, gnl|oryCun1|scaffold_177027 (32775-32878) | |
| 45-158, gnl|oryCun1|scaffold_177027 (32775-32863) | |
| 45-158, gnl|panTro1|chr20 (1849241-1849375) | |
| 45-158, gnl|panTro1|chr7 (88867522-88867624) | |
| 45-158, gnl|panTro1|chr7 (88879971-88880059) | |
| 45-158, gnl|rheMac2|chr19 (1584294-1584427) | |
| 45-158, gnl|rheMac2|chr3 (70992035-70991940) | |
| 45-158, gnl|rheMac2|chr8 (88103536-88103434) | |
| 45-158, gnl|rheMac2|chr8 (88103536-88103448) | |
| 45-158, gnl|rn3|chr2 (143809401-143809306) | |
| 45-158, gnl|rn3|chr7 (10681393-10681291) | |
| 45-158, gnl|rn3|chr7 (10681413-10681279) | |
| 45-158, gnl|rn3|chr7 (10681393-10681305) | |
| 45-158, gnl|tetNig1|chr1 (15259518-15259613) | |
| 45-158, gnl|tetNig1|chr1 (15259518-15259630) | |
| 45-158, gnl|tetNig1|chr1 (15259518-15259606) | |
| 228-343, gnl|bosTau2|chr7 (28272405-28272520) | |
| 228-343, gnl|canFam2|chr20 (60279937-60279827) | |
| 228-343, gnl|canFam2|chr20 (60279845-60279931) | |
| 228-343, gnl|canFam2|chr20 (60279942-60279823) | |
| 228-343, gnl|canFam2|chr20 (60279937-60279827) | |
| 228-343, gnl|danRer3|chr8 (11836873-11836983) | |
| 228-343, gnl|danRer3|chr8 (11836868-11836987) | |
| 228-343, gnl|dasNov1|scaffold_38534 (13110-13000) | |
| 228-343, gnl|dasNov1|scaffold_38534 (13018-13104) | |
| 228-343, gnl|dasNov1|scaffold_38534 (13110-13000) | |
| 228-343, gnl|dasNov1|scaffold_38534 (13110-13000) | |
| 228-343, gnl|fr1|chrUn (126824245-126824135) | |
| 228-343, gnl|fr1|chrUn (126824250-126824131) | |
| 228-343, gnl|fr1|chrUn (126824244-126824135) | |
| 228-343, gnl|galGal2|chr28 (1207591-1207472) | |
| 228-343, gnl|hg17|chr19 (1768214-1768333) | |
| 228-343, gnl|Hg17|chr19 (1768333-1768218) | |
| 228-343, gnl|hg17|chr7 (55186388-55186473) | |
| 228-343, gnl|hg17|chr8 (86742711-86742821) | |
| 228-343, gnl|hg17|chr8_random (588058-588168) | |
| 228-343, gnl|mm7|chr10 (80332484-80332594) | |
| 228-343, gnl|mm7|chr10 (80332576-80332490) | |
| 228-343, gnl|mm7|chr10 (80332479-80332598) | |
| 228-343, gnl|mm7|chr10 (80332484-80332594) | |
| 228-343, gnl|Mm7|chr10 (80332598-80332483) | |
| 228-343, gnl|monDom2|scaffold_119 (690410-690528) | |
| 228-343, gnl|oryCun1|scaffold_177027 (32579-32689) | |
| 228-343, gnl|oryCun1|scaffold_177027 (32671-32585) | |
| 228-343, gnl|oryCun1|scaffold_177027 (32579-32693) | |
| 228-343, gnl|oryCun1|scaffold_177027 (32579-32689) | |
| 228-343, gnl|panTro1|chr20 (1848077-1848005) | |
| 228-343, gnl|panTro1|chr20 (1847980-1848099) | |
| 228-343, gnl|panTro1|chr7 (88879775-88879869) | |
| 228-343, gnl|panTro1|chr7 (88879775-88879885) | |
| 228-343, gnl|rheMac2|chr19 (1583042-1583161) | |
| 228-343, gnl|rheMac2|chr3 (70991888-70991803) | |
| 228-343, gnl|rheMac2|chr8 (88103732-88103622) | |
| 228-343, gnl|rheMac2|chr8 (88103732-88103622) | |
| 228-343, gnl|rn3|chr7 (10682082-10681972) | |
| 228-343, gnl|rn3|chr7 (10681990-10682076) | |
| 228-343, gnl|rn3|chr7 (10682087-10681968) | |
| 228-343, gnl|rn3|chr7 (10682082-10681972) | |
| 228-343, gnl|tetNig1|chr1 (15259150-15259260) | |
| 228-343, gnl|tetNig1|chr1 (15259145-15259264) | |
| 228-343, gnl|tetNig1|chr1 (15259151-15259260) | |
| 228-343, gnl|xenTro1|scaffold_721 (185377-185489) | |
| 456-600, gnl|bosTau2|chr7 (28273157-28273301) | |
| 456-600, gnl|canFam2|chr20 (60280737-60280620) | |
| 456-600, gnl|canFam2|chr20 (60280741-60280620) | |
| 456-600, gnl|danRer3|chr8 (11836416-11836533) | |
| 456-600, gnl|danRer3|chr8 (11836416-11836533) | |
| 456-600, gnl|dasNov1|scaffold_38534 (13363-13246) | |
| 456-600, gnl|dasNov1|scaffold_38534 (13367-13246) | |
| 456-600, gnl|echTel1|scaffold_247033 (1656-1773) | |
| 456-600, gnl|echTel1|scaffold_247033 (1656-1773) | |
| 456-600, gnl|fr1|chrUn (126824815-126824698) | |
| 456-600, gnl|fr1|chrUn (126824819-126824698) | |
| 456-600, gnl|Hg17|chr19 (1767572-1767428) | |
| 456-600, gnl|hg17|chr8 (86742458-86742575) | |
| 456-600, gnl|hg17|chr8_random (587801-587922) | |
| 456-600, gnl|mm7|chr10 (80331871-80331988) | |
| 456-600, gnl|mm7|chr10 (80331867-80331988) | |
| 456-600, gnl|Mm7|chr10 (80332009-80331875) | |
| 456-600, gnl|oryCun1|scaffold_177027 (32326-32443) | |
| 456-600, gnl|oryCun1|scaffold_177027 (32322-32443) | |
| 456-600, gnl|panTro1|chr7 (88879521-88879639) | |
| 456-600, gnl|panTro1|chr7 (88879517-88879639) | |
| 456-600, gnl|rheMac2|chr8 (88103985-88103868) | |
| 456-600, gnl|rheMac2|chr8 (88103989-88103868) | |
| 456-600, gnl|rn3|chr7 (10682751-10682634) | |
| 456-600, gnl|rn3|chr7 (10682755-10682634) | |
| 456-600, gnl|tetNig1|chr1 (15258725-15258842) | |
| 456-600, gnl|tetNig1|chr1 (15258725-15258842) |
| Aligned organism(s): 121 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-158, gnl|bosTau2|chr7 (28271463-28271576) | |
| 45-158, gnl|canFam2|chr20 (60279010-60278908) | |
| 45-158, gnl|canFam2|chr20 (60278908-60279007) | |
| 45-158, gnl|canFam2|chr20 (60279030-60278896) | |
| 45-158, gnl|canFam2|chr20 (60279010-60278922) | |
| 45-158, gnl|danRer3|chr8 (11839227-11839322) | |
| 45-158, gnl|danRer3|chr8 (11839211-11839335) | |
| 45-158, gnl|dasNov1|scaffold_38534 (12914-12812) | |
| 45-158, gnl|dasNov1|scaffold_38534 (12812-12911) | |
| 45-158, gnl|dasNov1|scaffold_38534 (12922-12812) | |
| 45-158, gnl|dasNov1|scaffold_38534 (12914-12826) | |
| 45-158, gnl|echTel1|scaffold_247033 (3985-4087) | |
| 45-158, gnl|echTel1|scaffold_247033 (4087-3988) | |
| 45-158, gnl|echTel1|scaffold_247033 (3965-4098) | |
| 45-158, gnl|echTel1|scaffold_247033 (3985-4073) | |
| 45-158, gnl|fr1|chrUn (126824024-126823967) | |
| 45-158, gnl|fr1|chrUn (126823885-126823754) | |
| 45-158, gnl|fr1|chrUn (126824024-126823967) | |
| 45-158, gnl|galGal2|chr28 (1203645-1203517) | |
| 45-158, gnl|hg17|chr19 (1769473-1769607) | |
| 45-158, gnl|Hg17|chr19 (1769594-1769481) | |
| 45-158, gnl|hg17|chr7 (55186241-55186336) | |
| 45-158, gnl|hg17|chr8 (86742907-86743009) | |
| 45-158, gnl|hg17|chr8_random (588254-588342) | |
| 45-158, gnl|mm7|chr10 (80333197-80333299) | |
| 45-158, gnl|mm7|chr10 (80333177-80333311) | |
| 45-158, gnl|mm7|chr10 (80333197-80333285) | |
| 45-158, gnl|Mm7|chr10 (80333298-80333185) | |
| 45-158, gnl|mm7|chrUn_random (9598233-9598138) | |
| 45-158, gnl|monDom2|scaffold_119 (691859-691979) | |
| 45-158, gnl|oryCun1|scaffold_177027 (32775-32877) | |
| 45-158, gnl|oryCun1|scaffold_177027 (32877-32782) | |
| 45-158, gnl|oryCun1|scaffold_177027 (32775-32878) | |
| 45-158, gnl|oryCun1|scaffold_177027 (32775-32863) | |
| 45-158, gnl|panTro1|chr20 (1849241-1849375) | |
| 45-158, gnl|panTro1|chr7 (88867522-88867624) | |
| 45-158, gnl|panTro1|chr7 (88879971-88880059) | |
| 45-158, gnl|rheMac2|chr19 (1584294-1584427) | |
| 45-158, gnl|rheMac2|chr3 (70992035-70991940) | |
| 45-158, gnl|rheMac2|chr8 (88103536-88103434) | |
| 45-158, gnl|rheMac2|chr8 (88103536-88103448) | |
| 45-158, gnl|rn3|chr2 (143809401-143809306) | |
| 45-158, gnl|rn3|chr7 (10681393-10681291) | |
| 45-158, gnl|rn3|chr7 (10681413-10681279) | |
| 45-158, gnl|rn3|chr7 (10681393-10681305) | |
| 45-158, gnl|tetNig1|chr1 (15259518-15259613) | |
| 45-158, gnl|tetNig1|chr1 (15259518-15259630) | |
| 45-158, gnl|tetNig1|chr1 (15259518-15259606) | |
| 228-343, gnl|bosTau2|chr7 (28272405-28272520) | |
| 228-343, gnl|canFam2|chr20 (60279937-60279827) | |
| 228-343, gnl|canFam2|chr20 (60279845-60279931) | |
| 228-343, gnl|canFam2|chr20 (60279942-60279823) | |
| 228-343, gnl|canFam2|chr20 (60279937-60279827) | |
| 228-343, gnl|danRer3|chr8 (11836873-11836983) | |
| 228-343, gnl|danRer3|chr8 (11836868-11836987) | |
| 228-343, gnl|dasNov1|scaffold_38534 (13110-13000) | |
| 228-343, gnl|dasNov1|scaffold_38534 (13018-13104) | |
| 228-343, gnl|dasNov1|scaffold_38534 (13110-13000) | |
| 228-343, gnl|dasNov1|scaffold_38534 (13110-13000) | |
| 228-343, gnl|fr1|chrUn (126824245-126824135) | |
| 228-343, gnl|fr1|chrUn (126824250-126824131) | |
| 228-343, gnl|fr1|chrUn (126824244-126824135) | |
| 228-343, gnl|galGal2|chr28 (1207591-1207472) | |
| 228-343, gnl|hg17|chr19 (1768214-1768333) | |
| 228-343, gnl|Hg17|chr19 (1768333-1768218) | |
| 228-343, gnl|hg17|chr7 (55186388-55186473) | |
| 228-343, gnl|hg17|chr8 (86742711-86742821) | |
| 228-343, gnl|hg17|chr8_random (588058-588168) | |
| 228-343, gnl|mm7|chr10 (80332484-80332594) | |
| 228-343, gnl|mm7|chr10 (80332576-80332490) | |
| 228-343, gnl|mm7|chr10 (80332479-80332598) | |
| 228-343, gnl|mm7|chr10 (80332484-80332594) | |
| 228-343, gnl|Mm7|chr10 (80332598-80332483) | |
| 228-343, gnl|monDom2|scaffold_119 (690410-690528) | |
| 228-343, gnl|oryCun1|scaffold_177027 (32579-32689) | |
| 228-343, gnl|oryCun1|scaffold_177027 (32671-32585) | |
| 228-343, gnl|oryCun1|scaffold_177027 (32579-32693) | |
| 228-343, gnl|oryCun1|scaffold_177027 (32579-32689) | |
| 228-343, gnl|panTro1|chr20 (1848077-1848005) | |
| 228-343, gnl|panTro1|chr20 (1847980-1848099) | |
| 228-343, gnl|panTro1|chr7 (88879775-88879869) | |
| 228-343, gnl|panTro1|chr7 (88879775-88879885) | |
| 228-343, gnl|rheMac2|chr19 (1583042-1583161) | |
| 228-343, gnl|rheMac2|chr3 (70991888-70991803) | |
| 228-343, gnl|rheMac2|chr8 (88103732-88103622) | |
| 228-343, gnl|rheMac2|chr8 (88103732-88103622) | |
| 228-343, gnl|rn3|chr7 (10682082-10681972) | |
| 228-343, gnl|rn3|chr7 (10681990-10682076) | |
| 228-343, gnl|rn3|chr7 (10682087-10681968) | |
| 228-343, gnl|rn3|chr7 (10682082-10681972) | |
| 228-343, gnl|tetNig1|chr1 (15259150-15259260) | |
| 228-343, gnl|tetNig1|chr1 (15259145-15259264) | |
| 228-343, gnl|tetNig1|chr1 (15259151-15259260) | |
| 228-343, gnl|xenTro1|scaffold_721 (185377-185489) | |
| 456-600, gnl|bosTau2|chr7 (28273157-28273301) | |
| 456-600, gnl|canFam2|chr20 (60280737-60280620) | |
| 456-600, gnl|canFam2|chr20 (60280741-60280620) | |
| 456-600, gnl|danRer3|chr8 (11836416-11836533) | |
| 456-600, gnl|danRer3|chr8 (11836416-11836533) | |
| 456-600, gnl|dasNov1|scaffold_38534 (13363-13246) | |
| 456-600, gnl|dasNov1|scaffold_38534 (13367-13246) | |
| 456-600, gnl|echTel1|scaffold_247033 (1656-1773) | |
| 456-600, gnl|echTel1|scaffold_247033 (1656-1773) | |
| 456-600, gnl|fr1|chrUn (126824815-126824698) | |
| 456-600, gnl|fr1|chrUn (126824819-126824698) | |
| 456-600, gnl|Hg17|chr19 (1767572-1767428) | |
| 456-600, gnl|hg17|chr8 (86742458-86742575) | |
| 456-600, gnl|hg17|chr8_random (587801-587922) | |
| 456-600, gnl|mm7|chr10 (80331871-80331988) | |
| 456-600, gnl|mm7|chr10 (80331867-80331988) | |
| 456-600, gnl|Mm7|chr10 (80332009-80331875) | |
| 456-600, gnl|oryCun1|scaffold_177027 (32326-32443) | |
| 456-600, gnl|oryCun1|scaffold_177027 (32322-32443) | |
| 456-600, gnl|panTro1|chr7 (88879521-88879639) | |
| 456-600, gnl|panTro1|chr7 (88879517-88879639) | |
| 456-600, gnl|rheMac2|chr8 (88103985-88103868) | |
| 456-600, gnl|rheMac2|chr8 (88103989-88103868) | |
| 456-600, gnl|rn3|chr7 (10682751-10682634) | |
| 456-600, gnl|rn3|chr7 (10682755-10682634) | |
| 456-600, gnl|tetNig1|chr1 (15258725-15258842) | |
| 456-600, gnl|tetNig1|chr1 (15258725-15258842) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| med (0.116252) |