Non-Coding RNA Search

Ss1.1-rnje19c_b12.5

Sequence:


               
               CTTTGAGCCTTGATGAGTTCCAGTATGTGGTATATTATGCAGAGCATTCAGAGCAAATAC
TCTCTCTCAGAGCGCTTAATCCGAACAATCGCTGCCATTCGCTCCTTCCCACATGACAAT
GTAGAGGACCTCATCAGAGGGGGAGCAGATGTGAACTGCACTCACGGCACACTGAAGCCC
CTGCATTGCGCCTGCATGGTGTCAGATGCCGACTGTGTGGAGTTACTCTTGGAGAAGGGA
GCTGAGGTGAATGCCCTGGATGGTTATAACCGAACAGCCCTCCACTATGCAGCCGAGAAA
GATGAGGCTTGTGTGGAGGTCCTGTTGGAGTATGGTGCAAACCCCAATGCACTGGATGGC
AACCGAGACACCCCGCTTCACTGGGCAGCCTTTAAGAACAATGCCGAGTGCGTGCGGGCA
CTCCTAGAGAGCGGGGCCTCTGTCAATGCCCTGGATTACAACAATGACACTCCGCTCAGC
TGGGCTGCCATGAAAGGAAATCTTGAGAGCGTCAGCATCCTTCTTGATTATGGCGCAGAG
GTCAGAGTCATCAACCTGAAAGGCCAGACACCCATCTCCCGCCTGGTGGCTCTGCTTGTC
AGAGGACTTGGAACAGAGAAGGAGGACTCTTGCTTTGAGCTCCTCCACAGAGCTGTTGGA
CACTTTGAATTAAGGAAAAATGGCACCATGCCACGAGAAGTGGCCAAAGACCAGCAGCTT
TGTGAAAAACTGACTGTTCTGTGCTCAGCCCCAGGGACTCTAAAAACACTCTCTCGCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGAGCCTTGATGAGTTCCAGTATGTGGTATATTATGCAGAGCATTCAGAGCAAATAC
TCTCTCTCAGAGCGCTTAATCCGAACAATCGCTGCCATTCGCTCCTTCCCACATGACAAT
GTAGAGGACCTCATCAGAGGGGGAGCAGATGTGAACTGCACTCACGGCACACTGAAGCCC
CTGCATTGCGCCTGCATGGTGTCAGATGCCGACTGTGTGGAGTTACTCTTGGAGAAGGGA
GCTGAGGTGAATGCCCTGGATGGTTATAACCGAACAGCCCTCCACTATGCAGCCGAGAAA
GATGAGGCTTGTGTGGAGGTCCTGTTGGAGTATGGTGCAAACCCCAATGCACTGGATGGC
AACCGAGACACCCCGCTTCACTGGGCAGCCTTTAAGAACAATGCCGAGTGCGTGCGGGCA
CTCCTAGAGAGCGGGGCCTCTGTCAATGCCCTGGATTACAACAATGACACTCCGCTCAGC
TGGGCTGCCATGAAAGGAAATCTTGAGAGCGTCAGCATCCTTCTTGATTATGGCGCAGAG
GTCAGAGTCATCAACCTGAAAGGCCAGACACCCATCTCCCGCCTGGTGGCTCTGCTTGTC
AGAGGACTTGGAACAGAGAAGGAGGACTCTTGCTTTGAGCTCCTCCACAGAGCTGTTGGA
CACTTTGAATTAAGGAAAAATGGCACCATGCCACGAGAAGTGGCCAAAGACCAGCAGCTT
TGTGAAAAACTGACTGTTCTGTGCTCAGCCCCAGGGACTCTAAAAACACTCTCTCGCTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48146789|emb|CAG33617.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48146789|emb|CAG33617.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               605-764, + strand, RNAz p=0.963663

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               605-764, + strand, RNAz p=0.963663

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-142, gnl|bosTau2|chr5 (25670883-25670742)
               

               
               1-142, gnl|canFam2|chr27 (9625515-9625357)
               

               
               1-142, gnl|danRer3|chr23 (39616537-39616671)
               

               
               1-142, gnl|dasNov1|scaffold_13229 (86101-86261)
               

               
               1-142, gnl|fr1|chrUn (41701077-41701232)
               

               
               1-142, gnl|galGal2|chrUn (134169293-134169166)
               

               
               1-142, gnl|hg17|chr12 (46833387-46833547)
               

               
               1-142, gnl|Hg17|chr12 (46833558-46833417)
               

               
               1-142, gnl|mm7|chr15 (98145803-98145963)
               

               
               1-142, gnl|Mm7|chr15 (98145974-98145833)
               

               
               1-142, gnl|oryCun1|scaffold_174478 (16232-16387)
               

               
               1-142, gnl|panTro1|chr10 (47902857-47903017)
               

               
               1-142, gnl|rheMac2|chr11 (45232852-45233012)
               

               
               1-142, gnl|rn3|chr7 (136932053-136932207)
               

               
               1-142, gnl|tetNig1|chr9 (3264821-3264681)
               

               
               1-142, gnl|xenTro1|scaffold_12 (3277094-3277206)
               


               
               245-780, gnl|bosTau2|chr5 (25667313-25666778)
               

               
               245-780, gnl|Hg17|chr12 (46830050-46829515)
               

               
               245-780, gnl|Mm7|chr15 (98139623-98139088)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-142, gnl|bosTau2|chr5 (25670883-25670742)
               

               
               1-142, gnl|canFam2|chr27 (9625515-9625357)
               

               
               1-142, gnl|danRer3|chr23 (39616537-39616671)
               

               
               1-142, gnl|dasNov1|scaffold_13229 (86101-86261)
               

               
               1-142, gnl|fr1|chrUn (41701077-41701232)
               

               
               1-142, gnl|galGal2|chrUn (134169293-134169166)
               

               
               1-142, gnl|hg17|chr12 (46833387-46833547)
               

               
               1-142, gnl|Hg17|chr12 (46833558-46833417)
               

               
               1-142, gnl|mm7|chr15 (98145803-98145963)
               

               
               1-142, gnl|Mm7|chr15 (98145974-98145833)
               

               
               1-142, gnl|oryCun1|scaffold_174478 (16232-16387)
               

               
               1-142, gnl|panTro1|chr10 (47902857-47903017)
               

               
               1-142, gnl|rheMac2|chr11 (45232852-45233012)
               

               
               1-142, gnl|rn3|chr7 (136932053-136932207)
               

               
               1-142, gnl|tetNig1|chr9 (3264821-3264681)
               

               
               1-142, gnl|xenTro1|scaffold_12 (3277094-3277206)
               


               
               245-780, gnl|bosTau2|chr5 (25667313-25666778)
               

               
               245-780, gnl|Hg17|chr12 (46830050-46829515)
               

               
               245-780, gnl|Mm7|chr15 (98139623-98139088)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               ste (0.135208)

	1-142, gnl\|bosTau2\|chr5 (25670883-25670742)
	1-142, gnl\|canFam2\|chr27 (9625515-9625357)
	1-142, gnl\|danRer3\|chr23 (39616537-39616671)
	1-142, gnl\|dasNov1\|scaffold_13229 (86101-86261)
	1-142, gnl\|fr1\|chrUn (41701077-41701232)
	1-142, gnl\|galGal2\|chrUn (134169293-134169166)
	1-142, gnl\|hg17\|chr12 (46833387-46833547)
	1-142, gnl\|Hg17\|chr12 (46833558-46833417)
	1-142, gnl\|mm7\|chr15 (98145803-98145963)
	1-142, gnl\|Mm7\|chr15 (98145974-98145833)
	1-142, gnl\|oryCun1\|scaffold_174478 (16232-16387)
	1-142, gnl\|panTro1\|chr10 (47902857-47903017)
	1-142, gnl\|rheMac2\|chr11 (45232852-45233012)
	1-142, gnl\|rn3\|chr7 (136932053-136932207)
	1-142, gnl\|tetNig1\|chr9 (3264821-3264681)
	1-142, gnl\|xenTro1\|scaffold_12 (3277094-3277206)

	245-780, gnl\|bosTau2\|chr5 (25667313-25666778)
	245-780, gnl\|Hg17\|chr12 (46830050-46829515)
	245-780, gnl\|Mm7\|chr15 (98139623-98139088)