Ss1.1-rnje19c_e16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCCGTGTTTACACCCCTGTTGGCAA AGCAGAGCAAGGAAAATTTGCGTTAGAGGTTGCTGCTAAAACTCTGCCTTTTTATAAGGA CTTTAAGAAAGGAATGAACATGTATTTAACCAAGTTCCAACAGAAGAATGCTGCCACAGA GGATCTCTGGGAATGTTTAGAAAATGCTAGTGGTAAACCTATAGCAGCTGTGATGAATAC CTGGACCAAACAAATGGGATTTCCTCTCATTTATGTGGAAGCGGAACAGGTAGAAGATGA CAGATTACTAAGGTTGTCTCAGAGGAAGTTCTGTGCCAGTGGACCATATGTTGGAGAAGA CTGTCCCCAGTGGATGGTTCCTATTACAATTTCTACTAGTGAAGATCCCAACCAGGCCAA ACTTAAAATTCTGATGGACAAGCCAGAGATGAATGTGGTTTTAAAAGATGTCAAACCAGA CCAGTGGGTGAAGTTAAACCTGGGAACGTTGGGTTTTATCGGACCCAGTACAGCTCGGCC ATGCTGGAAAGTTTATTACCAGGCATTCGTGACCTTTCTCTGCCCCCTGTGGATCGACTT GGACTACAGAATGACCTCTTCTCCTTGGCTCGAGCTGGAATCATTAGCACTGTAGAGGTT CTAAAAGTCATGGAGGCTTTTGTGAATGAGCCCAATTATACTGTATGGAGCGACCTGAGC TGTAACCTGGGGATTCTCTCAACTCTCTTGTCCCACACAGACTTCTATGAGGAAATCCAG GAGTTTGTGAAAGATGTCTTTTCACCTATAGGGGAGAGACTGGGCTGGGACCCCAAACCT GGAGAAGGTCATCTAGATGCACTCCTGAGGGGTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCCGTGTTTACACCCCTGTTGGCAA AGCAGAGCAAGGAAAATTTGCGTTAGAGGTTGCTGCTAAAACTCTGCCTTTTTATAAGGA CTTTAAGAAAGGAATGAACATGTATTTAACCAAGTTCCAACAGAAGAATGCTGCCACAGA GGATCTCTGGGAATGTTTAGAAAATGCTAGTGGTAAACCTATAGCAGCTGTGATGAATAC CTGGACCAAACAAATGGGATTTCCTCTCATTTATGTGGAAGCGGAACAGGTAGAAGATGA CAGATTACTAAGGTTGTCTCAGAGGAAGTTCTGTGCCAGTGGACCATATGTTGGAGAAGA CTGTCCCCAGTGGATGGTTCCTATTACAATTTCTACTAGTGAAGATCCCAACCAGGCCAA ACTTAAAATTCTGATGGACAAGCCAGAGATGAATGTGGTTTTAAAAGATGTCAAACCAGA CCAGTGGGTGAAGTTAAACCTGGGAACGTTGGGTTTTATCGGACCCAGTACAGCTCGGCC ATGCTGGAAAGTTTATTACCAGGCATTCGTGACCTTTCTCTGCCCCCTGTGGATCGACTT GGACTACAGAATGACCTCTTCTCCTTGGCTCGAGCTGGAATCATTAGCACTGTAGAGGTT CTAAAAGTCATGGAGGCTTTTGTGAATGAGCCCAATTATACTGTATGGAGCGACCTGAGC TGTAACCTGGGGATTCTCTCAACTCTCTTGTCCCACACAGACTTCTATGAGGAAATCCAG GAGTTTGTGAAAGATGTCTTTTCACCTATAGGGGAGAGACTGGGCTGGGACCCCAAACCT GGAGAAGGTCATCTAGATGCACTCCTGAGGGGTTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 736-852, + strand, RNAz p=0.990267 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 736-852, + strand, RNAz p=0.990267 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 178-292, gnl|bosTau2|chr19 (32653174-32653060) | |
| 178-292, gnl|canFam2|chr9 (27273907-27274074) | |
| 178-292, gnl|danRer3|chr11 (13488732-13488891) | |
| 178-292, gnl|dasNov1|scaffold_49107 (11416-11248) | |
| 178-292, gnl|echTel1|scaffold_294016 (7625-7462) | |
| 178-292, gnl|fr1|chrUn (150302716-150302577) | |
| 178-292, gnl|galGal2|chrUn (137118178-137118053) | |
| 178-292, gnl|hg17|chr17 (43028691-43028851) | |
| 178-292, gnl|Hg17|chr17 (43028716-43028830) | |
| 178-292, gnl|loxAfr1|scaffold_5605 (8550-8714) | |
| 178-292, gnl|mm7|chr11 (97341069-97340905) | |
| 178-292, gnl|Mm7|chr11 (97341039-97340925) | |
| 178-292, gnl|monDom2|scaffold_18 (47042637-47042471) | |
| 178-292, gnl|oryCun1|scaffold_187313 (18630-18793) | |
| 178-292, gnl|panTro1|chr19_random (41899725-41899885) | |
| 178-292, gnl|rheMac2|chr16 (31797097-31797257) | |
| 178-292, gnl|rn3|chr10 (85968670-85968506) | |
| 178-292, gnl|tetNig1|chr18 (10041873-10041735) | |
| 178-292, gnl|xenTro1|scaffold_334 (738184-738048) | |
| 353-493, gnl|bosTau2|chr19 (32648494-32648354) | |
| 353-493, gnl|canFam2|chr9 (27279186-27279304) | |
| 353-493, gnl|danRer3|chr11 (13489276-13489383) | |
| 353-493, gnl|dasNov1|scaffold_49107 (2810-2703) | |
| 353-493, gnl|echTel1|scaffold_294016 (3389-3273) | |
| 353-493, gnl|fr1|chrUn (150302300-150302190) | |
| 353-493, gnl|galGal2|chrUn (137117089-137116981) | |
| 353-493, gnl|hg17|chr17 (43033947-43034060) | |
| 353-493, gnl|Hg17|chr17 (43033972-43034112) | |
| 353-493, gnl|loxAfr1|scaffold_5605 (13476-13593) | |
| 353-493, gnl|mm7|chr11 (97335938-97335822) | |
| 353-493, gnl|Mm7|chr11 (97335908-97335768) | |
| 353-493, gnl|monDom2|scaffold_18 (47033134-47033026) | |
| 353-493, gnl|panTro1|chr19_random (41905964-41906077) | |
| 353-493, gnl|rheMac2|chr16 (31806982-31807094) | |
| 353-493, gnl|rn3|chr10 (85964360-85964244) | |
| 353-493, gnl|tetNig1|chr18 (10041463-10041375) | |
| 353-493, gnl|xenTro1|scaffold_334 (734778-734677) | |
| 617-852, gnl|bosTau2|chr19 (32645133-32644898) | |
| 617-852, gnl|Hg17|chr17 (43037687-43037922) | |
| 617-852, gnl|Mm7|chr11 (97332220-97331981) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-292, gnl|bosTau2|chr19 (32653174-32653060) | |
| 178-292, gnl|canFam2|chr9 (27273907-27274074) | |
| 178-292, gnl|danRer3|chr11 (13488732-13488891) | |
| 178-292, gnl|dasNov1|scaffold_49107 (11416-11248) | |
| 178-292, gnl|echTel1|scaffold_294016 (7625-7462) | |
| 178-292, gnl|fr1|chrUn (150302716-150302577) | |
| 178-292, gnl|galGal2|chrUn (137118178-137118053) | |
| 178-292, gnl|hg17|chr17 (43028691-43028851) | |
| 178-292, gnl|Hg17|chr17 (43028716-43028830) | |
| 178-292, gnl|loxAfr1|scaffold_5605 (8550-8714) | |
| 178-292, gnl|mm7|chr11 (97341069-97340905) | |
| 178-292, gnl|Mm7|chr11 (97341039-97340925) | |
| 178-292, gnl|monDom2|scaffold_18 (47042637-47042471) | |
| 178-292, gnl|oryCun1|scaffold_187313 (18630-18793) | |
| 178-292, gnl|panTro1|chr19_random (41899725-41899885) | |
| 178-292, gnl|rheMac2|chr16 (31797097-31797257) | |
| 178-292, gnl|rn3|chr10 (85968670-85968506) | |
| 178-292, gnl|tetNig1|chr18 (10041873-10041735) | |
| 178-292, gnl|xenTro1|scaffold_334 (738184-738048) | |
| 353-493, gnl|bosTau2|chr19 (32648494-32648354) | |
| 353-493, gnl|canFam2|chr9 (27279186-27279304) | |
| 353-493, gnl|danRer3|chr11 (13489276-13489383) | |
| 353-493, gnl|dasNov1|scaffold_49107 (2810-2703) | |
| 353-493, gnl|echTel1|scaffold_294016 (3389-3273) | |
| 353-493, gnl|fr1|chrUn (150302300-150302190) | |
| 353-493, gnl|galGal2|chrUn (137117089-137116981) | |
| 353-493, gnl|hg17|chr17 (43033947-43034060) | |
| 353-493, gnl|Hg17|chr17 (43033972-43034112) | |
| 353-493, gnl|loxAfr1|scaffold_5605 (13476-13593) | |
| 353-493, gnl|mm7|chr11 (97335938-97335822) | |
| 353-493, gnl|Mm7|chr11 (97335908-97335768) | |
| 353-493, gnl|monDom2|scaffold_18 (47033134-47033026) | |
| 353-493, gnl|panTro1|chr19_random (41905964-41906077) | |
| 353-493, gnl|rheMac2|chr16 (31806982-31807094) | |
| 353-493, gnl|rn3|chr10 (85964360-85964244) | |
| 353-493, gnl|tetNig1|chr18 (10041463-10041375) | |
| 353-493, gnl|xenTro1|scaffold_334 (734778-734677) | |
| 617-852, gnl|bosTau2|chr19 (32645133-32644898) | |
| 617-852, gnl|Hg17|chr17 (43037687-43037922) | |
| 617-852, gnl|Mm7|chr11 (97332220-97331981) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| csp (0.161186) | |
| pty (0.142714) |