Ss1.1-rnje19c_e2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGACTCCTTGAATCTCTGCTCCGGCCTACTCGCCTCCTCTCCAGCCTCCACCATGTCCAT CCGGGTGACCCAGAAGTCCTACAAAGTGTCCACCTCCGGCCCCCGGTCCTTCAGCAGCCG CTCCTACACCAGCGGGCCGGGCACCCGCATCAGCTCCTCGGCCTTCTCCCGGGTGGGCAG CAGCAGCAGCAGCTTCCGGGGTGGCCTGGGCTCTGGCATGAGTCTGGTTGGAGGTTACGG TGGGCCCTCAGGCTTGGGAGGCATCACAGCTGTCACAGTGAACCAGAGCCTGCTGAGCCC CCTTAAGCTGGAGGTGGACCCCAACATCCAGGCCGTGCGCACCCAGGAGAAGGAGCAGAT CAAGACTCTCAACAATAAGTTTGCCTCCTTCATCGACAAGGTGCGGCACCTGGAGCAGCA GAACAAGGTTCTGGAGACCAAATGGAACCTCCTGCAGCAGCAGAAGACGGCCCGGAGCAA CATCGACAACATGTTCGAGAGCTATATCAACAACCTCCGGCGGCAGCTGGAAACCCTGGC CCAGGAGAAGCTGAAGCTGGAGGTGGAGCTTGGCAACATGCAGGGCCTGGTGGAGGACTT CAAGAACAAGTATGAGGAGGAGATCCAAAAGCGTACCGACATGGAGAATGAATTTGTCAT CATCAAGAAGGATGTGGATGAAGCTTACATGAACAAGGTCGAGCTGGAGTCCCGCCTGGA AGGGCTGACCGACGAGATCAACTTCTACAGGCAGCTGTATGAAGAGGAGATCCGTGAGAT GCAGTCTCAGATTTCCGACACCTCCGTGGTCCTCTCCATGGACAACAGCCGCTCCCTGGA CCTGGACGGCATCATCGCCGAGGTCAAGGCCCAGTACGAGGAGATCGCCAACCGCAGCCG GGCCGAGGCTGAGACCATGTACCAGATCAAGTATGAGGAGCTGCAGTCTCTGGCTGGGAA GCACGGGGATGACCTCCGTCGCACGAAGACGGAGATTTCGGAGATGAACCGGAACATCAG CCGACTCCAGGCTGAGATCGAGGGCCTCAAGGGCCAGAGGGCGTCCCTGGAGGCTGCCAT CGCTGATGCCGAGCAGCGTGGGGAGCTGGCTGTCAAGGATGCTCAGGCCAAGCTGGCCGA GCTGGAGGCCGCCCTGAGAACCGCCAAGCAGGACATGGCGCGGCAGCTGCGTGAGTACCA GGAGCTGATGAATGTCAAGCTGGCCCTGGACGTGGAGATCGCCACCTACCGCAAGCTGCT GGAGGGAGAGGAGAGCAGGCTGGAGTCTGGGATGCAGAACATGAGTATCCACACCAAGAC CACCAGCGGCTACTCAGGTGGGGTGACCTACGGGACTCCAGGCTTCAACTACAGCCTGAG CTCCTACCAGTCCGGTGGCTTGGGCTCTGTCGGGGGCTCTGGCTCCTTCAGCCGCACCAG TTCCAAGGCTGTGGTTGTGAAGAAGATCGAGACCCGCGATGGGAAGCTGGTGTCTGAGTC CTCTGATGTCCTGTCCAAGTGAGAAGCTCCTGCATCCCTCCCCGCCTCCCCGAGTTCCTG CAGAAGGAGGCTACAGGAGAGCCTCGCTCTGGGGAGGCGACTGCTTAGGCTTCCCCCTCT TGCCCAGGCCCCCAACTCCAAGCCAATTCAAATGTCTTTTTCAGAATAAAGCTTCAGCTG GCTCTGCCAACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGACTCCTTGAATCTCTGCTCCGGCCTACTCGCCTCCTCTCCAGCCTCCACCATGTCCAT CCGGGTGACCCAGAAGTCCTACAAAGTGTCCACCTCCGGCCCCCGGTCCTTCAGCAGCCG CTCCTACACCAGCGGGCCGGGCACCCGCATCAGCTCCTCGGCCTTCTCCCGGGTGGGCAG CAGCAGCAGCAGCTTCCGGGGTGGCCTGGGCTCTGGCATGAGTCTGGTTGGAGGTTACGG TGGGCCCTCAGGCTTGGGAGGCATCACAGCTGTCACAGTGAACCAGAGCCTGCTGAGCCC CCTTAAGCTGGAGGTGGACCCCAACATCCAGGCCGTGCGCACCCAGGAGAAGGAGCAGAT CAAGACTCTCAACAATAAGTTTGCCTCCTTCATCGACAAGGTGCGGCACCTGGAGCAGCA GAACAAGGTTCTGGAGACCAAATGGAACCTCCTGCAGCAGCAGAAGACGGCCCGGAGCAA CATCGACAACATGTTCGAGAGCTATATCAACAACCTCCGGCGGCAGCTGGAAACCCTGGC CCAGGAGAAGCTGAAGCTGGAGGTGGAGCTTGGCAACATGCAGGGCCTGGTGGAGGACTT CAAGAACAAGTATGAGGAGGAGATCCAAAAGCGTACCGACATGGAGAATGAATTTGTCAT CATCAAGAAGGATGTGGATGAAGCTTACATGAACAAGGTCGAGCTGGAGTCCCGCCTGGA AGGGCTGACCGACGAGATCAACTTCTACAGGCAGCTGTATGAAGAGGAGATCCGTGAGAT GCAGTCTCAGATTTCCGACACCTCCGTGGTCCTCTCCATGGACAACAGCCGCTCCCTGGA CCTGGACGGCATCATCGCCGAGGTCAAGGCCCAGTACGAGGAGATCGCCAACCGCAGCCG GGCCGAGGCTGAGACCATGTACCAGATCAAGTATGAGGAGCTGCAGTCTCTGGCTGGGAA GCACGGGGATGACCTCCGTCGCACGAAGACGGAGATTTCGGAGATGAACCGGAACATCAG CCGACTCCAGGCTGAGATCGAGGGCCTCAAGGGCCAGAGGGCGTCCCTGGAGGCTGCCAT CGCTGATGCCGAGCAGCGTGGGGAGCTGGCTGTCAAGGATGCTCAGGCCAAGCTGGCCGA GCTGGAGGCCGCCCTGAGAACCGCCAAGCAGGACATGGCGCGGCAGCTGCGTGAGTACCA GGAGCTGATGAATGTCAAGCTGGCCCTGGACGTGGAGATCGCCACCTACCGCAAGCTGCT GGAGGGAGAGGAGAGCAGGCTGGAGTCTGGGATGCAGAACATGAGTATCCACACCAAGAC CACCAGCGGCTACTCAGGTGGGGTGACCTACGGGACTCCAGGCTTCAACTACAGCCTGAG CTCCTACCAGTCCGGTGGCTTGGGCTCTGTCGGGGGCTCTGGCTCCTTCAGCCGCACCAG TTCCAAGGCTGTGGTTGTGAAGAAGATCGAGACCCGCGATGGGAAGCTGGTGTCTGAGTC CTCTGATGTCCTGTCCAAGTGAGAAGCTCCTGCATCCCTCCCCGCCTCCCCGAGTTCCTG CAGAAGGAGGCTACAGGAGAGCCTCGCTCTGGGGAGGCGACTGCTTAGGCTTCCCCCTCT TGCCCAGGCCCCCAACTCCAAGCCAATTCAAATGTCTTTTTCAGAATAAAGCTTCAGCTG GCTCTGCCAACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 765-1279, - strand, RNAz p=0.760073 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 765-1279, - strand, RNAz p=0.760073 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 14-221, gnl|bosTau2|chr5 (20380269-20380065) | |
| 14-221, gnl|Hg17|chr12 (51585071-51584874) | |
| 14-221, gnl|Mm7|chr15 (101990423-101990229) | |
| 385-626, gnl|bosTau2|chr5 (19902501-19902253) | |
| 385-626, gnl|Hg17|chr12 (51113319-51113072) | |
| 385-626, gnl|Mm7|chr15 (101559010-101558761) | |
| 399-611, gnl|bosTau2|chr5 (20378021-20377809) | |
| 399-611, gnl|canFam2|chr27 (5229233-5229018) | |
| 399-611, gnl|danRer3|chr23 (6429409-6429627) | |
| 399-611, gnl|dasNov1|scaffold_13898 (3728-3514) | |
| 399-611, gnl|echTel1|scaffold_279801 (5369-5586) | |
| 399-611, gnl|fr1|chrUn (50209001-50209219) | |
| 399-611, gnl|galGal2|chrUn (7868733-7868945) | |
| 399-611, gnl|hg17|chr12 (51581908-51582126) | |
| 399-611, gnl|Hg17|chr12 (51582125-51581913) | |
| 399-611, gnl|loxAfr1|scaffold_150348 (4584-4799) | |
| 399-611, gnl|mm7|chr15 (101987570-101987785) | |
| 399-611, gnl|Mm7|chr15 (101987784-101987572) | |
| 399-611, gnl|monDom2|scaffold_168 (490357-490578) | |
| 399-611, gnl|oryCun1|scaffold_203303 (46116-45909) | |
| 399-611, gnl|panTro1|chr10 (52808125-52808343) | |
| 399-611, gnl|rheMac2|chr11 (49969634-49969852) | |
| 399-611, gnl|rn3|chr7 (140795159-140795374) | |
| 399-611, gnl|tetNig1|chrUn_random (43152752-43152537) | |
| 399-611, gnl|xenTro1|scaffold_312 (1283474-1283689) | |
| 765-931, gnl|bosTau2|chr5 (20376009-20375843) | |
| 765-931, gnl|canFam2|chr27 (5231198-5231046) | |
| 765-931, gnl|danRer3|chr23 (6428398-6428552) | |
| 765-931, gnl|dasNov1|scaffold_13898 (5420-5266) | |
| 765-931, gnl|echTel1|scaffold_280753 (5715-5862) | |
| 765-931, gnl|fr1|chrUn (50208037-50208191) | |
| 765-931, gnl|galGal2|chrUn (7864974-7865128) | |
| 765-931, gnl|hg17|chr12 (51579953-51580107) | |
| 765-931, gnl|Hg17|chr12 (51580118-51579952) | |
| 765-931, gnl|loxAfr1|scaffold_14351 (1093-1247) | |
| 765-931, gnl|mm7|chr15 (101984932-101985086) | |
| 765-931, gnl|Mm7|chr15 (101985097-101984931) | |
| 765-931, gnl|monDom2|scaffold_168 (486187-486341) | |
| 765-931, gnl|oryCun1|scaffold_203303 (46436-46282) | |
| 765-931, gnl|panTro1|chr10 (52806170-52806324) | |
| 765-931, gnl|rheMac2|chr11 (49967444-49967598) | |
| 765-931, gnl|rn3|chr7 (140792709-140792863) | |
| 765-931, gnl|tetNig1|chrUn_random (43154104-43153950) | |
| 765-931, gnl|xenTro1|scaffold_312 (1280786-1280940) | |
| 1055-1291, gnl|bosTau2|chr5 (20374691-20374455) | |
| 1055-1291, gnl|Hg17|chr12 (51578953-51578717) | |
| 1055-1291, gnl|Mm7|chr15 (101984233-101983997) | |
| 1166-1279, gnl|bosTau2|chr13 (19902377-19902490) | |
| 1166-1279, gnl|canFam2|chr2 (22508665-22508523) | |
| 1166-1279, gnl|danRer3|chr24 (29509616-29509753) | |
| 1166-1279, gnl|dasNov1|scaffold_103823 (3528-3671) | |
| 1166-1279, gnl|echTel1|scaffold_89498 (2636-2779) | |
| 1166-1279, gnl|fr1|chrUn (164748044-164747901) | |
| 1166-1279, gnl|galGal2|chr2 (19101683-19101540) | |
| 1166-1279, gnl|hg17|chr10 (17317261-17317404) | |
| 1166-1279, gnl|Hg17|chr10 (17317282-17317395) | |
| 1166-1279, gnl|loxAfr1|scaffold_72049 (6912-7045) | |
| 1166-1279, gnl|mm7|chr2 (13519263-13519406) | |
| 1166-1279, gnl|Mm7|chr2 (13519284-13519397) | |
| 1166-1279, gnl|monDom2|scaffold_7 (52315440-52315297) | |
| 1166-1279, gnl|oryCun1|scaffold_178329 (51113-51256) | |
| 1166-1279, gnl|panTro1|chr8_random (14384825-14384682) | |
| 1166-1279, gnl|rheMac2|chr4 (137315649-137315787) | |
| 1166-1279, gnl|rn3|chr17 (87864013-87864156) | |
| 1166-1279, gnl|tetNig1|chrUn_random (16823858-16823721) | |
| 1166-1279, gnl|xenTro1|scaffold_553 (743873-744012) | |
| 1382-1595, gnl|bosTau2|chr5 (20373794-20373571) | |
| 1382-1595, gnl|Hg17|chr12 (51577655-51577381) | |
| 1382-1595, gnl|Mm7|chr15 (101983276-101983005) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-221, gnl|bosTau2|chr5 (20380269-20380065) | |
| 14-221, gnl|Hg17|chr12 (51585071-51584874) | |
| 14-221, gnl|Mm7|chr15 (101990423-101990229) | |
| 385-626, gnl|bosTau2|chr5 (19902501-19902253) | |
| 385-626, gnl|Hg17|chr12 (51113319-51113072) | |
| 385-626, gnl|Mm7|chr15 (101559010-101558761) | |
| 399-611, gnl|bosTau2|chr5 (20378021-20377809) | |
| 399-611, gnl|canFam2|chr27 (5229233-5229018) | |
| 399-611, gnl|danRer3|chr23 (6429409-6429627) | |
| 399-611, gnl|dasNov1|scaffold_13898 (3728-3514) | |
| 399-611, gnl|echTel1|scaffold_279801 (5369-5586) | |
| 399-611, gnl|fr1|chrUn (50209001-50209219) | |
| 399-611, gnl|galGal2|chrUn (7868733-7868945) | |
| 399-611, gnl|hg17|chr12 (51581908-51582126) | |
| 399-611, gnl|Hg17|chr12 (51582125-51581913) | |
| 399-611, gnl|loxAfr1|scaffold_150348 (4584-4799) | |
| 399-611, gnl|mm7|chr15 (101987570-101987785) | |
| 399-611, gnl|Mm7|chr15 (101987784-101987572) | |
| 399-611, gnl|monDom2|scaffold_168 (490357-490578) | |
| 399-611, gnl|oryCun1|scaffold_203303 (46116-45909) | |
| 399-611, gnl|panTro1|chr10 (52808125-52808343) | |
| 399-611, gnl|rheMac2|chr11 (49969634-49969852) | |
| 399-611, gnl|rn3|chr7 (140795159-140795374) | |
| 399-611, gnl|tetNig1|chrUn_random (43152752-43152537) | |
| 399-611, gnl|xenTro1|scaffold_312 (1283474-1283689) | |
| 765-931, gnl|bosTau2|chr5 (20376009-20375843) | |
| 765-931, gnl|canFam2|chr27 (5231198-5231046) | |
| 765-931, gnl|danRer3|chr23 (6428398-6428552) | |
| 765-931, gnl|dasNov1|scaffold_13898 (5420-5266) | |
| 765-931, gnl|echTel1|scaffold_280753 (5715-5862) | |
| 765-931, gnl|fr1|chrUn (50208037-50208191) | |
| 765-931, gnl|galGal2|chrUn (7864974-7865128) | |
| 765-931, gnl|hg17|chr12 (51579953-51580107) | |
| 765-931, gnl|Hg17|chr12 (51580118-51579952) | |
| 765-931, gnl|loxAfr1|scaffold_14351 (1093-1247) | |
| 765-931, gnl|mm7|chr15 (101984932-101985086) | |
| 765-931, gnl|Mm7|chr15 (101985097-101984931) | |
| 765-931, gnl|monDom2|scaffold_168 (486187-486341) | |
| 765-931, gnl|oryCun1|scaffold_203303 (46436-46282) | |
| 765-931, gnl|panTro1|chr10 (52806170-52806324) | |
| 765-931, gnl|rheMac2|chr11 (49967444-49967598) | |
| 765-931, gnl|rn3|chr7 (140792709-140792863) | |
| 765-931, gnl|tetNig1|chrUn_random (43154104-43153950) | |
| 765-931, gnl|xenTro1|scaffold_312 (1280786-1280940) | |
| 1055-1291, gnl|bosTau2|chr5 (20374691-20374455) | |
| 1055-1291, gnl|Hg17|chr12 (51578953-51578717) | |
| 1055-1291, gnl|Mm7|chr15 (101984233-101983997) | |
| 1166-1279, gnl|bosTau2|chr13 (19902377-19902490) | |
| 1166-1279, gnl|canFam2|chr2 (22508665-22508523) | |
| 1166-1279, gnl|danRer3|chr24 (29509616-29509753) | |
| 1166-1279, gnl|dasNov1|scaffold_103823 (3528-3671) | |
| 1166-1279, gnl|echTel1|scaffold_89498 (2636-2779) | |
| 1166-1279, gnl|fr1|chrUn (164748044-164747901) | |
| 1166-1279, gnl|galGal2|chr2 (19101683-19101540) | |
| 1166-1279, gnl|hg17|chr10 (17317261-17317404) | |
| 1166-1279, gnl|Hg17|chr10 (17317282-17317395) | |
| 1166-1279, gnl|loxAfr1|scaffold_72049 (6912-7045) | |
| 1166-1279, gnl|mm7|chr2 (13519263-13519406) | |
| 1166-1279, gnl|Mm7|chr2 (13519284-13519397) | |
| 1166-1279, gnl|monDom2|scaffold_7 (52315440-52315297) | |
| 1166-1279, gnl|oryCun1|scaffold_178329 (51113-51256) | |
| 1166-1279, gnl|panTro1|chr8_random (14384825-14384682) | |
| 1166-1279, gnl|rheMac2|chr4 (137315649-137315787) | |
| 1166-1279, gnl|rn3|chr17 (87864013-87864156) | |
| 1166-1279, gnl|tetNig1|chrUn_random (16823858-16823721) | |
| 1166-1279, gnl|xenTro1|scaffold_553 (743873-744012) | |
| 1382-1595, gnl|bosTau2|chr5 (20373794-20373571) | |
| 1382-1595, gnl|Hg17|chr12 (51577655-51577381) | |
| 1382-1595, gnl|Mm7|chr15 (101983276-101983005) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| amn (4.59482) | |
| nco (3.55814) | |
| col (2.92512) | |
| ill (2.63389) | |
| jej (2.37412) | |
| duo (2.24641) | |
| nje (1.6592) | |
| pty (0.999001) | |
| eje (0.889504) | |
| fli (0.811524) | |
| nmm (0.664011) | |
| cov (0.660764) | |
| cli (0.611247) | |
| ute (0.531138) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| cut (0.339847) | |
| cty (0.31224) | |
| pgl (0.236967) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eli (0.151814) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (4.59482) | |
| nco (3.55814) | |
| col (2.92512) | |
| ill (2.63389) | |
| jej (2.37412) | |
| duo (2.24641) | |
| nje (1.6592) | |
| pty (0.999001) | |
| eje (0.889504) | |
| fli (0.811524) | |
| nmm (0.664011) | |
| cov (0.660764) | |
| cli (0.611247) | |
| ute (0.531138) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| cut (0.339847) | |
| cty (0.31224) | |
| pgl (0.236967) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eli (0.151814) |