Non-Coding RNA Search

Ss1.1-rnje19c_k11.5

Sequence:


               
               GAGAACTGGGCTTTCTCCAAGATGCGGAGGTTGAGGTTTTTCCAGACCCATCCTGGATAA
GTTTGAAGTGGGTCTACGTGGTACCATGGGGAATACGTAAACTACTGAAATACATTAAGG
ATACATATAATAACCCTGTAATTTACATCACCGAGAATGGGTTTCCCCAGGGTGACCCCG
CATCTTTTGATGACACTCAGCGCTGGGAGTATTTCAGACAGACATTTCAGGAGCTGTTCA
AAGCTATACAACTTGATAAAGTCAATCTTCAAGTATATTGTGCCTGGTCTCTTCTGGATA
ACTTTGAGTGGTGCCAGGGGTACAGCAGCCGGTTTGGTCTCTTCCATGTTGATTTCGAAG
ATCCAGCAAGACCCCGAGTGCCTTACACATCAGCCAAGGAGTATGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAACTGGGCTTTCTCCAAGATGCGGAGGTTGAGGTTTTTCCAGACCCATCCTGGATAA
GTTTGAAGTGGGTCTACGTGGTACCATGGGGAATACGTAAACTACTGAAATACATTAAGG
ATACATATAATAACCCTGTAATTTACATCACCGAGAATGGGTTTCCCCAGGGTGACCCCG
CATCTTTTGATGACACTCAGCGCTGGGAGTATTTCAGACAGACATTTCAGGAGCTGTTCA
AAGCTATACAACTTGATAAAGTCAATCTTCAAGTATATTGTGCCTGGTCTCTTCTGGATA
ACTTTGAGTGGTGCCAGGGGTACAGCAGCCGGTTTGGTCTCTTCCATGTTGATTTCGAAG
ATCCAGCAAGACCCCGAGTGCCTTACACATCAGCCAAGGAGTATGCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               99-246, - strand, RNAz p=0.887812

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-246, - strand, RNAz p=0.887812

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               99-246, gnl|bosTau2|chr6 (20429018-20428869)
               

               
               99-246, gnl|Hg17|chr4 (22426706-22426855)
               

               
               99-246, gnl|Mm7|chr5 (49673311-49673460)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-246, gnl|bosTau2|chr6 (20429018-20428869)
               

               
               99-246, gnl|Hg17|chr4 (22426706-22426855)
               

               
               99-246, gnl|Mm7|chr5 (49673311-49673460)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sin (0.174948)
               

               
               nje (0.16592)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               kid (0.129735)

	99-246, gnl\|bosTau2\|chr6 (20429018-20428869)
	99-246, gnl\|Hg17\|chr4 (22426706-22426855)
	99-246, gnl\|Mm7\|chr5 (49673311-49673460)