Ss1.1-rnje19c_l18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTCATGGGGGAGGTGGTGGCGCTTGGTGGCTGCCGGCGGCCGAGGTAGAGGCAGTGGCG CTGGAGTTGGTCGAGGATAGCGGCAGATTCGGGGCTAAGGCAGCTTCTTCCAGGGAAGAG GGCCAGTGCAACTGCTGTTGCAACCCACCGTCTTGACCCATATCCATAGATTGGAATATT GGTGGGCCAGCCATCCTCAGACACCTCACTTAGGACAGATGAGGAAACTGAGGCTTGGTG AAGTTACGAAACTTGTCCAAAGTCACACAGCTTGTAAAGGGCACAGCCAAGATTCAGAGC CAGATTGTAAAAATTAAAATGAATAAACTACGGCAAAGCTTTAGGAGAAAGAAAGATGTT TATGTTCCAGAGGCCAGTCGTCCACATCAGTGGCAGACAGATGAAGAAGGAGTTCGTACT GGAAAATGTAGCTTCCCAGTTAAGTACCTTGGCCATGTAGAAGTTGATGAATCAAGAGGA ATGCACATCTGTGAAGATGCTGTAAAAAGATTAAAAGCTACTGGAAAGAGAGAACACTCT GCAGTCCTGTGGGTATCAGCAGATGGACTCAGAGTTGTGGATGAAAAAACTAAGGACCTC ATAGTTGACCAGACAATAGAAAAAGTTTCTTTCTGTGCCCCAGATAGGAACTTTGATAGA GCCTTCTCTTACGATCACTTCTAATGAGAATACCAACGCTGGATCTGTCATTGCTTCATG GCTGTCAAGGACACGGGTGAAAGACTGAGCCATGCAGTAGGCTGTGCTTTTGCAGCCTGT TTAGAACGTAAGCAGAAGCGGGAGAAAGAATGTGGAGTGACAGCTACTTTTGATGCCAGT CGGACCACTTTCACAAGAGAAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTCATGGGGGAGGTGGTGGCGCTTGGTGGCTGCCGGCGGCCGAGGTAGAGGCAGTGGCG CTGGAGTTGGTCGAGGATAGCGGCAGATTCGGGGCTAAGGCAGCTTCTTCCAGGGAAGAG GGCCAGTGCAACTGCTGTTGCAACCCACCGTCTTGACCCATATCCATAGATTGGAATATT GGTGGGCCAGCCATCCTCAGACACCTCACTTAGGACAGATGAGGAAACTGAGGCTTGGTG AAGTTACGAAACTTGTCCAAAGTCACACAGCTTGTAAAGGGCACAGCCAAGATTCAGAGC CAGATTGTAAAAATTAAAATGAATAAACTACGGCAAAGCTTTAGGAGAAAGAAAGATGTT TATGTTCCAGAGGCCAGTCGTCCACATCAGTGGCAGACAGATGAAGAAGGAGTTCGTACT GGAAAATGTAGCTTCCCAGTTAAGTACCTTGGCCATGTAGAAGTTGATGAATCAAGAGGA ATGCACATCTGTGAAGATGCTGTAAAAAGATTAAAAGCTACTGGAAAGAGAGAACACTCT GCAGTCCTGTGGGTATCAGCAGATGGACTCAGAGTTGTGGATGAAAAAACTAAGGACCTC ATAGTTGACCAGACAATAGAAAAAGTTTCTTTCTGTGCCCCAGATAGGAACTTTGATAGA GCCTTCTCTTACGATCACTTCTAATGAGAATACCAACGCTGGATCTGTCATTGCTTCATG GCTGTCAAGGACACGGGTGAAAGACTGAGCCATGCAGTAGGCTGTGCTTTTGCAGCCTGT TTAGAACGTAAGCAGAAGCGGGAGAAAGAATGTGGAGTGACAGCTACTTTTGATGCCAGT CGGACCACTTTCACAAGAGAAGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 84-232, gnl|bosTau2|chr22 (39898702-39898851) | |
| 84-232, gnl|canFam2|chr8 (49784998-49785191) | |
| 84-232, gnl|dasNov1|scaffold_50177 (2536-2669) | |
| 84-232, gnl|echTel1|scaffold_201278 (951-771) | |
| 84-232, gnl|hg17|chr14 (72946337-72946533) | |
| 84-232, gnl|Hg17|chr14 (72946532-72946383) | |
| 84-232, gnl|loxAfr1|scaffold_9106 (32022-32205) | |
| 84-232, gnl|mm7|chr12 (81872657-81872846) | |
| 84-232, gnl|Mm7|chr12 (81872845-81872690) | |
| 84-232, gnl|oryCun1|scaffold_125182 (12123-11927) | |
| 84-232, gnl|panTro1|chr15 (72743972-72744168) | |
| 84-232, gnl|rheMac2|chr7 (136535438-136535639) | |
| 84-232, gnl|rn3|chr6 (107925525-107925709) | |
| 301-444, gnl|bosTau2|chr10 (59854231-59854088) | |
| 301-444, gnl|canFam2|chr8 (49720230-49720362) | |
| 301-444, gnl|danRer3|chr20 (8132638-8132506) | |
| 301-444, gnl|dasNov1|scaffold_271903 (472-604) | |
| 301-444, gnl|echTel1|scaffold_202174 (4054-4186) | |
| 301-444, gnl|fr1|chrUn (197488146-197488014) | |
| 301-444, gnl|galGal2|chr5 (23515611-23515479) | |
| 301-444, gnl|hg17|chr14 (72892083-72892215) | |
| 301-444, gnl|Hg17|chr14 (72892239-72892087) | |
| 301-444, gnl|loxAfr1|scaffold_83541 (4328-4196) | |
| 301-444, gnl|mm7|chr12 (81838251-81838383) | |
| 301-444, gnl|Mm7|chr12 (81838398-81838255) | |
| 301-444, gnl|monDom2|scaffold_8 (61825918-61825786) | |
| 301-444, gnl|oryCun1|scaffold_40828 (647-515) | |
| 301-444, gnl|panTro1|chr15 (72684761-72684893) | |
| 301-444, gnl|rheMac2|chr7 (136473390-136473522) | |
| 301-444, gnl|rn3|chr6 (107885629-107885761) | |
| 301-444, gnl|tetNig1|chr10 (11721530-11721659) | |
| 301-444, gnl|xenTro1|scaffold_799 (434654-434522) | |
| 722-864, gnl|bosTau2|chr10 (59806628-59806487) | |
| 722-864, gnl|canFam2|chr8 (49668625-49668845) | |
| 722-864, gnl|danRer3|chrUn (181878416-181878632) | |
| 722-864, gnl|dasNov1|scaffold_25766 (48863-48643) | |
| 722-864, gnl|echTel1|scaffold_166865 (1779-1559) | |
| 722-864, gnl|galGal2|chr5 (23543794-23543570) | |
| 722-864, gnl|hg17|chr14 (72823565-72823784) | |
| 722-864, gnl|Hg17|chr14 (72823787-72823647) | |
| 722-864, gnl|loxAfr1|scaffold_12485 (19580-19800) | |
| 722-864, gnl|mm7|chr12 (81799811-81800031) | |
| 722-864, gnl|Mm7|chr12 (81800034-81799893) | |
| 722-864, gnl|monDom2|scaffold_8 (61897358-61897138) | |
| 722-864, gnl|oryCun1|scaffold_213686 (12289-12069) | |
| 722-864, gnl|panTro1|chr15 (72611607-72611826) | |
| 722-864, gnl|rheMac2|chr7 (136404005-136404225) | |
| 722-864, gnl|rn3|chr6 (107850365-107850585) | |
| 722-864, gnl|tetNig1|chr10 (11714401-11714615) | |
| 722-864, gnl|xenTro1|scaffold_799 (452488-452269) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 84-232, gnl|bosTau2|chr22 (39898702-39898851) | |
| 84-232, gnl|canFam2|chr8 (49784998-49785191) | |
| 84-232, gnl|dasNov1|scaffold_50177 (2536-2669) | |
| 84-232, gnl|echTel1|scaffold_201278 (951-771) | |
| 84-232, gnl|hg17|chr14 (72946337-72946533) | |
| 84-232, gnl|Hg17|chr14 (72946532-72946383) | |
| 84-232, gnl|loxAfr1|scaffold_9106 (32022-32205) | |
| 84-232, gnl|mm7|chr12 (81872657-81872846) | |
| 84-232, gnl|Mm7|chr12 (81872845-81872690) | |
| 84-232, gnl|oryCun1|scaffold_125182 (12123-11927) | |
| 84-232, gnl|panTro1|chr15 (72743972-72744168) | |
| 84-232, gnl|rheMac2|chr7 (136535438-136535639) | |
| 84-232, gnl|rn3|chr6 (107925525-107925709) | |
| 301-444, gnl|bosTau2|chr10 (59854231-59854088) | |
| 301-444, gnl|canFam2|chr8 (49720230-49720362) | |
| 301-444, gnl|danRer3|chr20 (8132638-8132506) | |
| 301-444, gnl|dasNov1|scaffold_271903 (472-604) | |
| 301-444, gnl|echTel1|scaffold_202174 (4054-4186) | |
| 301-444, gnl|fr1|chrUn (197488146-197488014) | |
| 301-444, gnl|galGal2|chr5 (23515611-23515479) | |
| 301-444, gnl|hg17|chr14 (72892083-72892215) | |
| 301-444, gnl|Hg17|chr14 (72892239-72892087) | |
| 301-444, gnl|loxAfr1|scaffold_83541 (4328-4196) | |
| 301-444, gnl|mm7|chr12 (81838251-81838383) | |
| 301-444, gnl|Mm7|chr12 (81838398-81838255) | |
| 301-444, gnl|monDom2|scaffold_8 (61825918-61825786) | |
| 301-444, gnl|oryCun1|scaffold_40828 (647-515) | |
| 301-444, gnl|panTro1|chr15 (72684761-72684893) | |
| 301-444, gnl|rheMac2|chr7 (136473390-136473522) | |
| 301-444, gnl|rn3|chr6 (107885629-107885761) | |
| 301-444, gnl|tetNig1|chr10 (11721530-11721659) | |
| 301-444, gnl|xenTro1|scaffold_799 (434654-434522) | |
| 722-864, gnl|bosTau2|chr10 (59806628-59806487) | |
| 722-864, gnl|canFam2|chr8 (49668625-49668845) | |
| 722-864, gnl|danRer3|chrUn (181878416-181878632) | |
| 722-864, gnl|dasNov1|scaffold_25766 (48863-48643) | |
| 722-864, gnl|echTel1|scaffold_166865 (1779-1559) | |
| 722-864, gnl|galGal2|chr5 (23543794-23543570) | |
| 722-864, gnl|hg17|chr14 (72823565-72823784) | |
| 722-864, gnl|Hg17|chr14 (72823787-72823647) | |
| 722-864, gnl|loxAfr1|scaffold_12485 (19580-19800) | |
| 722-864, gnl|mm7|chr12 (81799811-81800031) | |
| 722-864, gnl|Mm7|chr12 (81800034-81799893) | |
| 722-864, gnl|monDom2|scaffold_8 (61897358-61897138) | |
| 722-864, gnl|oryCun1|scaffold_213686 (12289-12069) | |
| 722-864, gnl|panTro1|chr15 (72611607-72611826) | |
| 722-864, gnl|rheMac2|chr7 (136404005-136404225) | |
| 722-864, gnl|rn3|chr6 (107850365-107850585) | |
| 722-864, gnl|tetNig1|chr10 (11714401-11714615) | |
| 722-864, gnl|xenTro1|scaffold_799 (452488-452269) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |