Non-Coding RNA Search

Ss1.1-rnje20c_b8.5

Sequence:


               
               GTTACATTATATATTAATGTAAATATCACTTTTTAAGTGATACCAGAATTCTAGAAGCAA
CTGGTAGAATTATAAACTGTCTCTCGACTTGAGTTTTTTCCCCCAGTGGGGTAAATTTTA
GGTTTCCCAGTTCCCAAGGGTTGGCAGAGAAGTTCCAGGGAGTCATATAACTAAAGGTAG
CAATGCTTTTTATTCTATTTCTGTTTTTTAAACCCATGAGAGAATTTCAATATACTTCAT
TTGAAAACAGTCAAGCTTCATGGTGAGTAAGGCTCGGCTGGCCTGCGACCTGCCATCTTC
CAGCCAGTGACCCAGCTGAACAGTGTTCGCCGCTGAGATGGTTTCGACCCTTTCAGTTTT
TTATTGTTTGATTTGCACTTTGTTTAATGTGCAATGATGTTAAAATATAACCAACAAACT
CCGCGTGTTAAATGGTAGCAATTCAACAAGATGATCCTCACCAGGGCTCTATTTCCACGT
ATCTGACCACAGTTTTTATGCAGCATTGTCAGGGGTAAAGTACTTCAAAAACAAATTGAA
GATATAATGAATCATAACTTTATTTAAATTACTTAAATGATAACTTTCATTAGATGATTA
AAGTTATCATTTCATGGCAATCAAGTTTATATCCTTACACAGTTTATTTGTAAGAAAAGT
ACTTTCTGATAGGAATATACCTTTTTTCTTTTATCATCGGAAAATAAAATATAGCCCTTA
TAAAAAATAAACCAATCCTCATTGTGAAGCCTTCAATGTATCATTTTATAAAAGCAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACATTATATATTAATGTAAATATCACTTTTTAAGTGATACCAGAATTCTAGAAGCAA
CTGGTAGAATTATAAACTGTCTCTCGACTTGAGTTTTTTCCCCCAGTGGGGTAAATTTTA
GGTTTCCCAGTTCCCAAGGGTTGGCAGAGAAGTTCCAGGGAGTCATATAACTAAAGGTAG
CAATGCTTTTTATTCTATTTCTGTTTTTTAAACCCATGAGAGAATTTCAATATACTTCAT
TTGAAAACAGTCAAGCTTCATGGTGAGTAAGGCTCGGCTGGCCTGCGACCTGCCATCTTC
CAGCCAGTGACCCAGCTGAACAGTGTTCGCCGCTGAGATGGTTTCGACCCTTTCAGTTTT
TTATTGTTTGATTTGCACTTTGTTTAATGTGCAATGATGTTAAAATATAACCAACAAACT
CCGCGTGTTAAATGGTAGCAATTCAACAAGATGATCCTCACCAGGGCTCTATTTCCACGT
ATCTGACCACAGTTTTTATGCAGCATTGTCAGGGGTAAAGTACTTCAAAAACAAATTGAA
GATATAATGAATCATAACTTTATTTAAATTACTTAAATGATAACTTTCATTAGATGATTA
AAGTTATCATTTCATGGCAATCAAGTTTATATCCTTACACAGTTTATTTGTAAGAAAAGT
ACTTTCTGATAGGAATATACCTTTTTTCTTTTATCATCGGAAAATAAAATATAGCCCTTA
TAAAAAATAAACCAATCCTCATTGTGAAGCCTTCAATGTATCATTTTATAAAAGCAGTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               260-369, - strand, RNAz p=0.994595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               260-369, - strand, RNAz p=0.994595

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-559, gnl|bosTau2|chr16 (45736774-45736220)
               

               
               2-559, gnl|Hg17|chr1 (176543386-176542491)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-559, gnl|bosTau2|chr16 (45736774-45736220)
               

               
               2-559, gnl|Hg17|chr1 (176543386-176542491)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)

	2-559, gnl\|bosTau2\|chr16 (45736774-45736220)
	2-559, gnl\|Hg17\|chr1 (176543386-176542491)