Non-Coding RNA Search

Ss1.1-rnje20c_n2.5

Sequence:


               
               GGAGCAGCAGCGCTGAAATCGGCTGAGGGAGCCGGAGAGAGTGGAGCGAGAGCCGAGCGG
AACCCGCGGGGGCGGAGGCGGCGGCCGCAGCGGCAGAGCTGCGAGCAGGAACAGAATCAA
GCCCTCCATACCAGGGACCAGACCAAAACCAGACCGCCGCTGCCCCTCCTTGCACCCGCC
TGTCCTCAGAAAGCAGCTGCTGTGATCATGGGTAATATCTTTGGAAACCTCCTCAAGAGC
CTGATTGGGAAGAAGGAGATGCGCATCCTGATGGTGGGTCTGGATGCCGCGGGGAAGACC
ACCATCCTGTACAAGCTGAAACTGGGCGAGATCGTCACCACCATCCCCACCATTGGGTTC
AACGTGGAGACGGTGGAGTACAAGAACATTAGCTTCACAGTTTGGGATGTGGGTGGCCAG
GACAAGATTCGGCCTCTCTGGAGACATTACTTCCAGAACACTCAAGGGTTGATATTTGTG
GTCGACAGCAATGATCGGGAGCGAGTAAATGAGGCCCGGGAGGAGCTGATGAGGATGCTG
GCAGAGGATGAGCTGCGGGATGCTGTGCTCCTTGTCTTTGCGAACAAACAGGATTTGCCT
AATGCTATGAACGCTGCTGAGATCACAGACAAGTTGGGCCTGCATTCCCTGCGTCACCGC
AACTGGTACATTCAGGCCACCTGTGCCACCAGTGGGGACGGGCTGTACGAAGGCCTGGAC
TGGCTGGCCAATCAGCTCAAAAACAAGAAGTGAGAGCCAGGCAGCCCTGTCCGACCACCA
CCCTCCCCCCACTGTCCCTGCCCCAGCCCTACCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCAGCAGCGCTGAAATCGGCTGAGGGAGCCGGAGAGAGTGGAGCGAGAGCCGAGCGG
AACCCGCGGGGGCGGAGGCGGCGGCCGCAGCGGCAGAGCTGCGAGCAGGAACAGAATCAA
GCCCTCCATACCAGGGACCAGACCAAAACCAGACCGCCGCTGCCCCTCCTTGCACCCGCC
TGTCCTCAGAAAGCAGCTGCTGTGATCATGGGTAATATCTTTGGAAACCTCCTCAAGAGC
CTGATTGGGAAGAAGGAGATGCGCATCCTGATGGTGGGTCTGGATGCCGCGGGGAAGACC
ACCATCCTGTACAAGCTGAAACTGGGCGAGATCGTCACCACCATCCCCACCATTGGGTTC
AACGTGGAGACGGTGGAGTACAAGAACATTAGCTTCACAGTTTGGGATGTGGGTGGCCAG
GACAAGATTCGGCCTCTCTGGAGACATTACTTCCAGAACACTCAAGGGTTGATATTTGTG
GTCGACAGCAATGATCGGGAGCGAGTAAATGAGGCCCGGGAGGAGCTGATGAGGATGCTG
GCAGAGGATGAGCTGCGGGATGCTGTGCTCCTTGTCTTTGCGAACAAACAGGATTTGCCT
AATGCTATGAACGCTGCTGAGATCACAGACAAGTTGGGCCTGCATTCCCTGCGTCACCGC
AACTGGTACATTCAGGCCACCTGTGCCACCAGTGGGGACGGGCTGTACGAAGGCCTGGAC
TGGCTGGCCAATCAGCTCAAAAACAAGAAGTGAGAGCCAGGCAGCCCTGTCCGACCACCA
CCCTCCCCCCACTGTCCCTGCCCCAGCCCTACCCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|19354187|gb|AAH24935.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19354187|gb|AAH24935.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               177-754, gnl|bosTau2|chr16 (24148694-24149245)
               

               
               177-754, gnl|Hg17|chr1 (224591554-224592450)
               

               
               177-754, gnl|Mm7|chr1 (44128376-44128983)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-754, gnl|bosTau2|chr16 (24148694-24149245)
               

               
               177-754, gnl|Hg17|chr1 (224591554-224592450)
               

               
               177-754, gnl|Mm7|chr1 (44128376-44128983)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ebs (0.236602)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	177-754, gnl\|bosTau2\|chr16 (24148694-24149245)
	177-754, gnl\|Hg17\|chr1 (224591554-224592450)
	177-754, gnl\|Mm7\|chr1 (44128376-44128983)

	ebs (0.236602)
	nje (0.16592)
	csp (0.161186)
	cli (0.152812)
	pla (0.133672)
	ute (0.132784)
	ese (0.126502)
	cly (0.120642)
	pgl (0.118483)
	ecc (0.115035)
	jej (0.0989218)