Non-Coding RNA Search

Ss1.1-rnje21c_l21.5

Sequence:


               
               GCTTCCTGTGACTTCGAGGCCGGTCTGTGTGGCTGGCATCATCTGCCCTGGCCTGGCCTG
GGCGGGTACAGCTGGGACTGGAGCAGCGGAGCCACACCCTCCCGCTACCGCCAGCCCCCT
GTGGACCACACCCTGGGCACAGAGAAAGGCCACTTTGCTCTCTTCGAAACGGGTGTGCTG
GGCCCGGGGGGCCGAGCGGCCTGGCTGCGCAGCCAGCCACTGCCTGCCACCGAGGTCTCC
TGCCTCCGCTTCTGGTACCACATGGGCTTTCCCGAGCACTTCTACAAGGGCGAGCTGAGG
GTGCTCCTGAGCAGCGCGCAGGGCCAGCTGGCTGTGTGGGGCACAGGCGGGCACCTGCGG
CACCAGTGGCTGGAAGGCCGGGTGCAAGTGGCCAGCGCTGAGGAGTTCCAGATCGTGTTT
GAAGCCACTCTGGGTGGCCAGCCGGCCCTGGGGCCCATTGCCCTAGACGACGTTGAGTAT
CTGGCCGGGCAGCATTGCCAGCAGCCTGCACCCAGCCAGGGGGACAGGGCAGTGGCCACA
TCGGTGCCAGCCATGGTTGGTAGTGCCCTCCTCCTCCTCGCGGTGCTGGTGCTGCTCGGA
CTTGTAGGGCGACGCTGGCTGCGGAAGCGGGCGGGCTGCCCCTCCGGGGGCGAGTCGGAG
GCCCCGGCCCCTGGCTTCGACAACATTCTTTTCAACGCGGATGGCATCACCCTGCCAGCG
TCAGTCACCACCGAGCAGTAGACAATCCAGAGAAGACGCCAGCTGCTCCAGAAGTCCCCA
TCCCTCCCCAGGACCCTAGCCCAGCACTACCTGCACCCTCACGCCTGGGTGTGGTCGTCA
CCCCAACAATAGCCCTAGCTCACAGAGACACCCCGGCCACTGAGGTCGAAGTCTGCGCGT
CCTGCTCCCTGCGTCCCCAGACCCCCCCACCTGCCTGAGAGTCATGCTTGGGGGTACCTC
CCACGTGTGTGTGACTCAGGTGACAGGAAACAAGCAGACCACAAGAGACAGGACCAGGGC
CTAAAGGCACCGGGAGGCAGAGGTGGGGCACCCCGAGAAGCCCCAGCCCAGCCAGGTGGG
ACGCTGACCCCGGGCCCATCTGGGGGATTCTGCATCCAGATAAAGCCAGACAGAAACCCC
CACAGGTACAGGCGACAGACGGGAGCAGACACAGGCCCGAGGTGGCCTGGAGCTGGGCTG
GTGGGGGTGCCCTGATGTGTGCATGGTGCCAGATAAGGGCCCGCTCTGTCTCCTCGCCAC
AGTAAGGCTCCTCTGTCCAGTGTCCCAAATAAAGGTCGCTGTGTGACGTGTCCCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCCTGTGACTTCGAGGCCGGTCTGTGTGGCTGGCATCATCTGCCCTGGCCTGGCCTG
GGCGGGTACAGCTGGGACTGGAGCAGCGGAGCCACACCCTCCCGCTACCGCCAGCCCCCT
GTGGACCACACCCTGGGCACAGAGAAAGGCCACTTTGCTCTCTTCGAAACGGGTGTGCTG
GGCCCGGGGGGCCGAGCGGCCTGGCTGCGCAGCCAGCCACTGCCTGCCACCGAGGTCTCC
TGCCTCCGCTTCTGGTACCACATGGGCTTTCCCGAGCACTTCTACAAGGGCGAGCTGAGG
GTGCTCCTGAGCAGCGCGCAGGGCCAGCTGGCTGTGTGGGGCACAGGCGGGCACCTGCGG
CACCAGTGGCTGGAAGGCCGGGTGCAAGTGGCCAGCGCTGAGGAGTTCCAGATCGTGTTT
GAAGCCACTCTGGGTGGCCAGCCGGCCCTGGGGCCCATTGCCCTAGACGACGTTGAGTAT
CTGGCCGGGCAGCATTGCCAGCAGCCTGCACCCAGCCAGGGGGACAGGGCAGTGGCCACA
TCGGTGCCAGCCATGGTTGGTAGTGCCCTCCTCCTCCTCGCGGTGCTGGTGCTGCTCGGA
CTTGTAGGGCGACGCTGGCTGCGGAAGCGGGCGGGCTGCCCCTCCGGGGGCGAGTCGGAG
GCCCCGGCCCCTGGCTTCGACAACATTCTTTTCAACGCGGATGGCATCACCCTGCCAGCG
TCAGTCACCACCGAGCAGTAGACAATCCAGAGAAGACGCCAGCTGCTCCAGAAGTCCCCA
TCCCTCCCCAGGACCCTAGCCCAGCACTACCTGCACCCTCACGCCTGGGTGTGGTCGTCA
CCCCAACAATAGCCCTAGCTCACAGAGACACCCCGGCCACTGAGGTCGAAGTCTGCGCGT
CCTGCTCCCTGCGTCCCCAGACCCCCCCACCTGCCTGAGAGTCATGCTTGGGGGTACCTC
CCACGTGTGTGTGACTCAGGTGACAGGAAACAAGCAGACCACAAGAGACAGGACCAGGGC
CTAAAGGCACCGGGAGGCAGAGGTGGGGCACCCCGAGAAGCCCCAGCCCAGCCAGGTGGG
ACGCTGACCCCGGGCCCATCTGGGGGATTCTGCATCCAGATAAAGCCAGACAGAAACCCC
CACAGGTACAGGCGACAGACGGGAGCAGACACAGGCCCGAGGTGGCCTGGAGCTGGGCTG
GTGGGGGTGCCCTGATGTGTGCATGGTGCCAGATAAGGGCCCGCTCTGTCTCCTCGCCAC
AGTAAGGCTCCTCTGTCCAGTGTCCCAAATAAAGGTCGCTGTGTGACGTGTCCCAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               31-149, - strand, RNAz p=0.565085

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               31-149, - strand, RNAz p=0.565085

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               46-149, - strand, RNAmicro p=0.959605

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               46-149, - strand, RNAmicro p=0.959605

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-149, gnl|bosTau2|chr11 (86229083-86229231)
               

               
               1-149, gnl|canFam2|chr9 (52062260-52062101)
               

               
               1-149, gnl|galGal2|chr17 (10290253-10290416)
               

               
               1-149, gnl|hg17|chr9 (137028683-137028846)
               

               
               1-149, gnl|Hg17|chr9 (137028688-137028836)
               

               
               1-149, gnl|mm7|chr2 (25572290-25572127)
               

               
               1-149, gnl|Mm7|chr2 (25572283-25572135)
               

               
               1-149, gnl|monDom2|scaffold_1 (188551335-188551172)
               

               
               1-149, gnl|panTro1|chr11 (121790655-121790818)
               

               
               1-149, gnl|rheMac2|chr15 (1399475-1399312)
               

               
               1-149, gnl|rn3|chr3 (3734875-3734712)
               

               
               1-149, gnl|xenTro1|scaffold_302 (780144-779912)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-149, gnl|bosTau2|chr11 (86229083-86229231)
               

               
               1-149, gnl|canFam2|chr9 (52062260-52062101)
               

               
               1-149, gnl|galGal2|chr17 (10290253-10290416)
               

               
               1-149, gnl|hg17|chr9 (137028683-137028846)
               

               
               1-149, gnl|Hg17|chr9 (137028688-137028836)
               

               
               1-149, gnl|mm7|chr2 (25572290-25572127)
               

               
               1-149, gnl|Mm7|chr2 (25572283-25572135)
               

               
               1-149, gnl|monDom2|scaffold_1 (188551335-188551172)
               

               
               1-149, gnl|panTro1|chr11 (121790655-121790818)
               

               
               1-149, gnl|rheMac2|chr15 (1399475-1399312)
               

               
               1-149, gnl|rn3|chr3 (3734875-3734712)
               

               
               1-149, gnl|xenTro1|scaffold_302 (780144-779912)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               nje (1.49328)
               

               
               nco (0.646935)
               

               
               eje (0.395335)
               

               
               fce (0.271592)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (1.49328)
               

               
               nco (0.646935)
               

               
               eje (0.395335)
               

               
               fce (0.271592)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	1-149, gnl\|bosTau2\|chr11 (86229083-86229231)
	1-149, gnl\|canFam2\|chr9 (52062260-52062101)
	1-149, gnl\|galGal2\|chr17 (10290253-10290416)
	1-149, gnl\|hg17\|chr9 (137028683-137028846)
	1-149, gnl\|Hg17\|chr9 (137028688-137028836)
	1-149, gnl\|mm7\|chr2 (25572290-25572127)
	1-149, gnl\|Mm7\|chr2 (25572283-25572135)
	1-149, gnl\|monDom2\|scaffold_1 (188551335-188551172)
	1-149, gnl\|panTro1\|chr11 (121790655-121790818)
	1-149, gnl\|rheMac2\|chr15 (1399475-1399312)
	1-149, gnl\|rn3\|chr3 (3734875-3734712)
	1-149, gnl\|xenTro1\|scaffold_302 (780144-779912)

	nje (1.49328)
	nco (0.646935)
	eje (0.395335)
	fce (0.271592)
	nep (0.183925)
	fbs (0.175346)
	ute (0.132784)
	thg (0.126791)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)