Ss1.1-rnje22c_a8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGGTGGCGCGGTGCCCCTGGCAGACCAGGCTCGGCGGCAGCGAGGGCAGTGCATCTCT GGTGCAACCTGACCATGGCGCCCATCCTGGGCTTGGCCCAGGAACTGTTGGTCTTCTTAG GAAAATCAATTCTTGTTGTTGTGGAGTCTCTGGTTTTCACCTTCATCCCAGTGCCTCGGA AGAAGGTTGCCGGTGAAATCGTGCTCATAACGGGTGCAGGGAGTGGACTTGGAAGGCTCT TAGCCCTCAAATTTGCCCGCCTCGGCTCCGTGCTTGTCCTCTGGGACATCAACCAGGAGA GGAATGAGGAGACCCGCAAGATGGTTCAGGAAGCCGGGGTCGCAGGCGCTTACGCCTACA CCTGTGACTGCAGCCAGAGGGAGGATGTGTACAGAGTGGCCAGTCAGGTTAAGAAAGAAG TTGGCGATGTTTCCATCCTGATCAACAATGCTGGAATTGTAACAGGCAGAAAGTTCCTCG ACTGCCCAGACGAACTTATGGAAAAGTCTTTAGATGTGAATTTCAAAGCACATTTATGGA CTTACAAAGCCTTTCTCCCTGCAATGATTGCGAATGACCATGGACACTTGGTTTGCATTT CAAGCTCGGCTGGATTAATTGGAGTATATGGCCTGGCAGATTATTGTGCGAGTAAATTTG CAGCCTTTGGATTTGCTGAAACTGTATTTTTTGAAACATTTGCCAGCAAACAAAAAGGGA TCAAAACCACTATTGTGTGCCCATTTTTTATAAAAACTCAAATGTTTGAAGGTTGTACTT CCAGGCTTTCTTATGTGTTACCAATTCTGGAACCAGAATATGCTGTCGAGAAGATAGTAG ATGCCATCCTGAAAGAACAACTGTACCTGTACATGCCAAGGTTTATATACATCATGGTGT TTTTGAAAAGTTTCTTGCCCCCCAAGCTGGGAATGCTTTTGGCTGAGTACGTGGGTGCCT TTAATTTCATGGATGGCTTCACGAACTCAAAGAAGAAGGACTGAAGACCAGCTCTGTGGC TGATGTCACCTGATACCCAGTGTCACAAAGTATCTATTTCAATGAAGAAAAGTCTTTGTC CTACAGACCTATCTGGAAACCACAAGTACCATTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGGTGGCGCGGTGCCCCTGGCAGACCAGGCTCGGCGGCAGCGAGGGCAGTGCATCTCT GGTGCAACCTGACCATGGCGCCCATCCTGGGCTTGGCCCAGGAACTGTTGGTCTTCTTAG GAAAATCAATTCTTGTTGTTGTGGAGTCTCTGGTTTTCACCTTCATCCCAGTGCCTCGGA AGAAGGTTGCCGGTGAAATCGTGCTCATAACGGGTGCAGGGAGTGGACTTGGAAGGCTCT TAGCCCTCAAATTTGCCCGCCTCGGCTCCGTGCTTGTCCTCTGGGACATCAACCAGGAGA GGAATGAGGAGACCCGCAAGATGGTTCAGGAAGCCGGGGTCGCAGGCGCTTACGCCTACA CCTGTGACTGCAGCCAGAGGGAGGATGTGTACAGAGTGGCCAGTCAGGTTAAGAAAGAAG TTGGCGATGTTTCCATCCTGATCAACAATGCTGGAATTGTAACAGGCAGAAAGTTCCTCG ACTGCCCAGACGAACTTATGGAAAAGTCTTTAGATGTGAATTTCAAAGCACATTTATGGA CTTACAAAGCCTTTCTCCCTGCAATGATTGCGAATGACCATGGACACTTGGTTTGCATTT CAAGCTCGGCTGGATTAATTGGAGTATATGGCCTGGCAGATTATTGTGCGAGTAAATTTG CAGCCTTTGGATTTGCTGAAACTGTATTTTTTGAAACATTTGCCAGCAAACAAAAAGGGA TCAAAACCACTATTGTGTGCCCATTTTTTATAAAAACTCAAATGTTTGAAGGTTGTACTT CCAGGCTTTCTTATGTGTTACCAATTCTGGAACCAGAATATGCTGTCGAGAAGATAGTAG ATGCCATCCTGAAAGAACAACTGTACCTGTACATGCCAAGGTTTATATACATCATGGTGT TTTTGAAAAGTTTCTTGCCCCCCAAGCTGGGAATGCTTTTGGCTGAGTACGTGGGTGCCT TTAATTTCATGGATGGCTTCACGAACTCAAAGAAGAAGGACTGAAGACCAGCTCTGTGGC TGATGTCACCTGATACCCAGTGTCACAAAGTATCTATTTCAATGAAGAAAAGTCTTTGTC CTACAGACCTATCTGGAAACCACAAGTACCATTCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 68-412, gnl|bosTau2|chr14 (11487733-11488077) | |
| 68-412, gnl|Hg17|chr8 (57391467-57391123) | |
| 68-412, gnl|Mm7|chr4 (3943578-3943234) | |
| 598-779, gnl|bosTau2|chr14 (11497213-11497395) | |
| 598-779, gnl|canFam2|chr29 (10669601-10669776) | |
| 598-779, gnl|danRer3|chr19 (33603861-33603677) | |
| 598-779, gnl|dasNov1|scaffold_4509 (8658-8482) | |
| 598-779, gnl|echTel1|scaffold_139182 (843-1003) | |
| 598-779, gnl|fr1|chrUn (284963963-284963806) | |
| 598-779, gnl|galGal2|chr2 (110502190-110502364) | |
| 598-779, gnl|hg17|chr8 (57381784-57381959) | |
| 598-779, gnl|Hg17|chr8 (57381977-57381794) | |
| 598-779, gnl|loxAfr1|scaffold_11102 (82452-82612) | |
| 598-779, gnl|mm7|chr4 (3933723-3933888) | |
| 598-779, gnl|monDom2|scaffold_4 (107737102-107736927) | |
| 598-779, gnl|oryCun1|scaffold_134956 (4418-4590) | |
| 598-779, gnl|panTro1|chr7 (59096265-59096440) | |
| 598-779, gnl|rheMac2|chr8 (58907304-58907479) | |
| 598-779, gnl|rn3|chr5 (17344349-17344524) | |
| 598-779, gnl|tetNig1|chrUn_random (18701914-18701757) | |
| 598-779, gnl|xenTro1|scaffold_8 (2846317-2846481) | |
| 909-1116, gnl|bosTau2|chr14 (11499953-11500160) | |
| 909-1116, gnl|canFam2|chr29 (10666201-10666631) | |
| 909-1116, gnl|galGal2|chr2 (110500805-110501233) | |
| 909-1116, gnl|hg17|chr8 (57376440-57376898) | |
| 909-1116, gnl|Hg17|chr8 (57376688-57376469) | |
| 909-1116, gnl|mm7|chr4 (3923178-3923547) | |
| 909-1116, gnl|Mm7|chr4 (3923404-3923206) | |
| 909-1116, gnl|monDom2|scaffold_4 (107746847-107746410) | |
| 909-1116, gnl|panTro1|chr7 (59090938-59091376) | |
| 909-1116, gnl|rheMac2|chr8 (58902212-58902675) | |
| 909-1116, gnl|rn3|chr5 (17339831-17340191) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-412, gnl|bosTau2|chr14 (11487733-11488077) | |
| 68-412, gnl|Hg17|chr8 (57391467-57391123) | |
| 68-412, gnl|Mm7|chr4 (3943578-3943234) | |
| 598-779, gnl|bosTau2|chr14 (11497213-11497395) | |
| 598-779, gnl|canFam2|chr29 (10669601-10669776) | |
| 598-779, gnl|danRer3|chr19 (33603861-33603677) | |
| 598-779, gnl|dasNov1|scaffold_4509 (8658-8482) | |
| 598-779, gnl|echTel1|scaffold_139182 (843-1003) | |
| 598-779, gnl|fr1|chrUn (284963963-284963806) | |
| 598-779, gnl|galGal2|chr2 (110502190-110502364) | |
| 598-779, gnl|hg17|chr8 (57381784-57381959) | |
| 598-779, gnl|Hg17|chr8 (57381977-57381794) | |
| 598-779, gnl|loxAfr1|scaffold_11102 (82452-82612) | |
| 598-779, gnl|mm7|chr4 (3933723-3933888) | |
| 598-779, gnl|monDom2|scaffold_4 (107737102-107736927) | |
| 598-779, gnl|oryCun1|scaffold_134956 (4418-4590) | |
| 598-779, gnl|panTro1|chr7 (59096265-59096440) | |
| 598-779, gnl|rheMac2|chr8 (58907304-58907479) | |
| 598-779, gnl|rn3|chr5 (17344349-17344524) | |
| 598-779, gnl|tetNig1|chrUn_random (18701914-18701757) | |
| 598-779, gnl|xenTro1|scaffold_8 (2846317-2846481) | |
| 909-1116, gnl|bosTau2|chr14 (11499953-11500160) | |
| 909-1116, gnl|canFam2|chr29 (10666201-10666631) | |
| 909-1116, gnl|galGal2|chr2 (110500805-110501233) | |
| 909-1116, gnl|hg17|chr8 (57376440-57376898) | |
| 909-1116, gnl|Hg17|chr8 (57376688-57376469) | |
| 909-1116, gnl|mm7|chr4 (3923178-3923547) | |
| 909-1116, gnl|Mm7|chr4 (3923404-3923206) | |
| 909-1116, gnl|monDom2|scaffold_4 (107746847-107746410) | |
| 909-1116, gnl|panTro1|chr7 (59090938-59091376) | |
| 909-1116, gnl|rheMac2|chr8 (58902212-58902675) | |
| 909-1116, gnl|rn3|chr5 (17339831-17340191) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nje (0.49776) | |
| fat (0.442282) | |
| pla (0.267344) | |
| nep (0.183925) | |
| ute (0.132784) | |
| eep (0.122564) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.49776) | |
| fat (0.442282) | |
| pla (0.267344) | |
| nep (0.183925) | |
| ute (0.132784) | |
| eep (0.122564) | |
| jej (0.0989218) |