Ss1.1-rnje22c_i19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCAGCCGGGGAGGGACGCAGGCAGGCGGCGGGCAGCGGGGAGGCGGCAGCCCGGTGCGG TTCCCGCGGCTCCAGTGCGGAGCCCCGCGCCCGCCGCGCCATGGCCCGGAGACCCCGGCA CAGCATCTACAGCAGTGACGAGGATGATGAAGACATTGAGATGTGTGACCATGACTATGA TGGGCTGCTTCCCAAGTCTGGAAAGCGTCACTTGGGGACAACTAGGTGGACCAGGGAAGA GGATGAAAAACTAAAGAAGCTGGTGGAACAGAATGGAACAGATGACTGGAAAGTTATTGC CAATTACCTCCCGAATCGAACAGATGTGCAGTGTCAGCACCGATGGCAGAAAGTACTAAA CCCTGAGCTCATCAAGGGTCCTTGGACCAAAGAAGAAGATCAGAGAGTGATAGAGCTTGT ACAGAAATACGGTCCGAAACGTTGGTCTGTTATTGCCAAGCACTTAAAGGGGAGAATTGG AAAACAATGTAGGGAGAGGTGGCATAACCACTTGAATCCAGAAGTTAAGAAAACCTCCTG GACAGAAGAGGAAGACAGAATTATTTACCAGGCACACAAGAGACTGGGGAACAGATGGGC AGAAATCGCANAGCTACTGCCTGGACGAACTGATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCAGCCGGGGAGGGACGCAGGCAGGCGGCGGGCAGCGGGGAGGCGGCAGCCCGGTGCGG TTCCCGCGGCTCCAGTGCGGAGCCCCGCGCCCGCCGCGCCATGGCCCGGAGACCCCGGCA CAGCATCTACAGCAGTGACGAGGATGATGAAGACATTGAGATGTGTGACCATGACTATGA TGGGCTGCTTCCCAAGTCTGGAAAGCGTCACTTGGGGACAACTAGGTGGACCAGGGAAGA GGATGAAAAACTAAAGAAGCTGGTGGAACAGAATGGAACAGATGACTGGAAAGTTATTGC CAATTACCTCCCGAATCGAACAGATGTGCAGTGTCAGCACCGATGGCAGAAAGTACTAAA CCCTGAGCTCATCAAGGGTCCTTGGACCAAAGAAGAAGATCAGAGAGTGATAGAGCTTGT ACAGAAATACGGTCCGAAACGTTGGTCTGTTATTGCCAAGCACTTAAAGGGGAGAATTGG AAAACAATGTAGGGAGAGGTGGCATAACCACTTGAATCCAGAAGTTAAGAAAACCTCCTG GACAGAAGAGGAAGACAGAATTATTTACCAGGCACACAAGAGACTGGGGAACAGATGGGC AGAAATCGCANAGCTACTGCCTGGACGAACTGATAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 438-597, + strand, RNAz p=0.63378 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 438-597, + strand, RNAz p=0.63378 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 121-242, gnl|bosTau2|chr9 (43090689-43090568) | |
| 121-242, gnl|canFam2|chr1 (30951973-30952105) | |
| 121-242, gnl|danRer3|chr23 (47363046-47362914) | |
| 121-242, gnl|fr1|chrUn (159142319-159142192) | |
| 121-242, gnl|galGal2|chr3 (54628112-54627980) | |
| 121-242, gnl|hg17|chr6 (135548728-135548860) | |
| 121-242, gnl|Hg17|chr6 (135548731-135548852) | |
| 121-242, gnl|loxAfr1|scaffold_17740 (30126-30259) | |
| 121-242, gnl|mm7|chr10 (20882520-20882388) | |
| 121-242, gnl|Mm7|chr10 (20882515-20882394) | |
| 121-242, gnl|monDom2|scaffold_0 (75429251-75429115) | |
| 121-242, gnl|oryCun1|scaffold_212611 (214141-214273) | |
| 121-242, gnl|panTro1|chr5 (138330734-138330866) | |
| 121-242, gnl|rheMac2|chr4 (128652223-128652091) | |
| 121-242, gnl|rn3|chr1 (16535835-16535703) | |
| 121-242, gnl|tetNig1|chr14 (5851612-5851739) | |
| 121-242, gnl|xenTro1|scaffold_422 (890212-890084) | |
| 399-627, gnl|bosTau2|chr9 (43086945-43086717) | |
| 399-627, gnl|Hg17|chr6 (135552950-135553178) | |
| 399-627, gnl|Mm7|chr10 (20878719-20878491) | |
| 407-624, gnl|bosTau2|chr13 (52680478-52680261) | |
| 407-624, gnl|canFam2|chr24 (34325801-34326038) | |
| 407-624, gnl|danRer3|chr11 (525297-525523) | |
| 407-624, gnl|dasNov1|scaffold_13040 (33406-33172) | |
| 407-624, gnl|echTel1|scaffold_279353 (119453-119691) | |
| 407-624, gnl|fr1|chrUn (163453233-163453460) | |
| 407-624, gnl|galGal2|chr20 (3448043-3447805) | |
| 407-624, gnl|hg17|chr20 (41748894-41749132) | |
| 407-624, gnl|Hg17|chr20 (41748906-41749123) | |
| 407-624, gnl|loxAfr1|scaffold_8194 (23731-23493) | |
| 407-624, gnl|mm7|chr2 (162805160-162805396) | |
| 407-624, gnl|Mm7|chr2 (162805170-162805387) | |
| 407-624, gnl|monDom2|scaffold_6 (9806515-9806280) | |
| 407-624, gnl|oryCun1|scaffold_97123 (928-1162) | |
| 407-624, gnl|panTro1|chr21 (44189270-44189508) | |
| 407-624, gnl|rheMac2|chr10 (20763850-20763612) | |
| 407-624, gnl|rn3|chr3 (153841453-153841690) | |
| 407-624, gnl|tetNig1|chrUn_random (104215529-104215300) | |
| 407-624, gnl|xenTro1|scaffold_35 (173516-173753) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-242, gnl|bosTau2|chr9 (43090689-43090568) | |
| 121-242, gnl|canFam2|chr1 (30951973-30952105) | |
| 121-242, gnl|danRer3|chr23 (47363046-47362914) | |
| 121-242, gnl|fr1|chrUn (159142319-159142192) | |
| 121-242, gnl|galGal2|chr3 (54628112-54627980) | |
| 121-242, gnl|hg17|chr6 (135548728-135548860) | |
| 121-242, gnl|Hg17|chr6 (135548731-135548852) | |
| 121-242, gnl|loxAfr1|scaffold_17740 (30126-30259) | |
| 121-242, gnl|mm7|chr10 (20882520-20882388) | |
| 121-242, gnl|Mm7|chr10 (20882515-20882394) | |
| 121-242, gnl|monDom2|scaffold_0 (75429251-75429115) | |
| 121-242, gnl|oryCun1|scaffold_212611 (214141-214273) | |
| 121-242, gnl|panTro1|chr5 (138330734-138330866) | |
| 121-242, gnl|rheMac2|chr4 (128652223-128652091) | |
| 121-242, gnl|rn3|chr1 (16535835-16535703) | |
| 121-242, gnl|tetNig1|chr14 (5851612-5851739) | |
| 121-242, gnl|xenTro1|scaffold_422 (890212-890084) | |
| 399-627, gnl|bosTau2|chr9 (43086945-43086717) | |
| 399-627, gnl|Hg17|chr6 (135552950-135553178) | |
| 399-627, gnl|Mm7|chr10 (20878719-20878491) | |
| 407-624, gnl|bosTau2|chr13 (52680478-52680261) | |
| 407-624, gnl|canFam2|chr24 (34325801-34326038) | |
| 407-624, gnl|danRer3|chr11 (525297-525523) | |
| 407-624, gnl|dasNov1|scaffold_13040 (33406-33172) | |
| 407-624, gnl|echTel1|scaffold_279353 (119453-119691) | |
| 407-624, gnl|fr1|chrUn (163453233-163453460) | |
| 407-624, gnl|galGal2|chr20 (3448043-3447805) | |
| 407-624, gnl|hg17|chr20 (41748894-41749132) | |
| 407-624, gnl|Hg17|chr20 (41748906-41749123) | |
| 407-624, gnl|loxAfr1|scaffold_8194 (23731-23493) | |
| 407-624, gnl|mm7|chr2 (162805160-162805396) | |
| 407-624, gnl|Mm7|chr2 (162805170-162805387) | |
| 407-624, gnl|monDom2|scaffold_6 (9806515-9806280) | |
| 407-624, gnl|oryCun1|scaffold_97123 (928-1162) | |
| 407-624, gnl|panTro1|chr21 (44189270-44189508) | |
| 407-624, gnl|rheMac2|chr10 (20763850-20763612) | |
| 407-624, gnl|rn3|chr3 (153841453-153841690) | |
| 407-624, gnl|tetNig1|chrUn_random (104215529-104215300) | |
| 407-624, gnl|xenTro1|scaffold_35 (173516-173753) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |