Ss1.1-rnje22c_o23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTTTGCAAATAACAATAACTACATGAATATGGCTGAGGCCAACAACGCTTTCTTTGCA GCCAGCGAGCAGACATTCCACACACCAAGTCTCGGGGATGAGGAGTTTGAAATACCCCCA ATCACGCCACCTCCAGAGTCAGACCCCGCCCTGGGCATGCCTGATGTACTTCTACCGTTT CAAGGCCTCAGCGATGCGTTGCCTTCCCAAGGAAGTGAATTCACACCCCAGTTTCCCCCT CAAAGCCTGGATCTTCCTTCCATTACCATCTCAAGGAATCTCGTGGAACAAGACGGCGTG CTTCACAGCAGTGGGTTGCACATGGATCAGAGCCACACACAAGTGTCACAGTACCGTCAG GATCCCTCCCTGGTCATGAGGTCCATCGTCCACATGACAGATGCTGCTCGCTCTGGAATC ATGCCTCCTGCCCAGCTCACCACCATCAACCAGTCTCAGCTCAGTGCCCAGCTGGGGTTG AATCTGGGAGGTGCCAGTGTGCCCCACACTTCTCCTTCACCTCCAGCGAGCAAATCTGCA ACTCCCTCCCCTTCCAGCTCCATCAATGAAGAGGACGCTGATGAATCCAACAGAGCCATT GGAGAGAAAAGAGCTGCTCCAGATTCTGGCAAGAAGCCCAAGACTCCAAAGAAAAAGAAA AAGAAAGATCCCAATGAGCCACAGAAGCCCGTGTCAGCATATGCCCTGTTTTTCAGAGAC ACTCAGGCTGCAATTAAAGGTCAAAACCCCAATGCAACCTTTGGAGAGGTCTCAAAAATC GTAGCATCCATGTGGGACAGCCTCGGAGAAGAACAAAAGCAGGTATATAAAAGGAAAACA GAAGCTGCCAAAAAAGAATACCTGAAAGCTCTCGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTTTGCAAATAACAATAACTACATGAATATGGCTGAGGCCAACAACGCTTTCTTTGCA GCCAGCGAGCAGACATTCCACACACCAAGTCTCGGGGATGAGGAGTTTGAAATACCCCCA ATCACGCCACCTCCAGAGTCAGACCCCGCCCTGGGCATGCCTGATGTACTTCTACCGTTT CAAGGCCTCAGCGATGCGTTGCCTTCCCAAGGAAGTGAATTCACACCCCAGTTTCCCCCT CAAAGCCTGGATCTTCCTTCCATTACCATCTCAAGGAATCTCGTGGAACAAGACGGCGTG CTTCACAGCAGTGGGTTGCACATGGATCAGAGCCACACACAAGTGTCACAGTACCGTCAG GATCCCTCCCTGGTCATGAGGTCCATCGTCCACATGACAGATGCTGCTCGCTCTGGAATC ATGCCTCCTGCCCAGCTCACCACCATCAACCAGTCTCAGCTCAGTGCCCAGCTGGGGTTG AATCTGGGAGGTGCCAGTGTGCCCCACACTTCTCCTTCACCTCCAGCGAGCAAATCTGCA ACTCCCTCCCCTTCCAGCTCCATCAATGAAGAGGACGCTGATGAATCCAACAGAGCCATT GGAGAGAAAAGAGCTGCTCCAGATTCTGGCAAGAAGCCCAAGACTCCAAAGAAAAAGAAA AAGAAAGATCCCAATGAGCCACAGAAGCCCGTGTCAGCATATGCCCTGTTTTTCAGAGAC ACTCAGGCTGCAATTAAAGGTCAAAACCCCAATGCAACCTTTGGAGAGGTCTCAAAAATC GTAGCATCCATGTGGGACAGCCTCGGAGAAGAACAAAAGCAGGTATATAAAAGGAAAACA GAAGCTGCCAAAAAAGAATACCTGAAAGCTCTCGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 443-595, - strand, RNAz p=0.859137 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 443-595, - strand, RNAz p=0.859137 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 324-595, gnl|bosTau2|chr18 (22100202-22100473) | |
| 324-595, gnl|canFam2|chr2 (65956711-65956457) | |
| 324-595, gnl|danRer3|chr7 (30907451-30907197) | |
| 324-595, gnl|dasNov1|scaffold_2409 (41843-42113) | |
| 324-595, gnl|echTel1|scaffold_280871 (72826-73096) | |
| 324-595, gnl|fr1|chrUn (10324810-10325059) | |
| 324-595, gnl|galGal2|chr11 (5291594-5291338) | |
| 324-595, gnl|hg17|chr16 (51041682-51041937) | |
| 324-595, gnl|Hg17|chr16 (51041960-51041689) | |
| 324-595, gnl|loxAfr1|scaffold_4054 (75808-76032) | |
| 324-595, gnl|mm7|chr8 (88850436-88850691) | |
| 324-595, gnl|Mm7|chr8 (88850714-88850443) | |
| 324-595, gnl|monDom2|scaffold_35 (18021431-18021703) | |
| 324-595, gnl|oryCun1|scaffold_198218 (133025-132770) | |
| 324-595, gnl|panTro1|chr18 (45089503-45089758) | |
| 324-595, gnl|rheMac2|chr20 (50649081-50649336) | |
| 324-595, gnl|rn3|chr19 (17969089-17968834) | |
| 324-595, gnl|tetNig1|chr5 (509939-510188) | |
| 324-595, gnl|xenTro1|scaffold_296 (1348621-1348874) | |
| 415-584, gnl|bosTau2|chr14 (12823249-12823418) | |
| 415-584, gnl|canFam2|chr29 (12593671-12593852) | |
| 415-584, gnl|danRer3|chr2 (10519974-10520142) | |
| 415-584, gnl|dasNov1|scaffold_2360 (99459-99640) | |
| 415-584, gnl|echTel1|scaffold_243354 (8573-8392) | |
| 415-584, gnl|fr1|chrUn (10324817-10324998) | |
| 415-584, gnl|galGal2|chr2 (111510331-111510512) | |
| 415-584, gnl|hg17|chr8 (59926636-59926817) | |
| 415-584, gnl|Hg17|chr8 (59926816-59926647) | |
| 415-584, gnl|loxAfr1|scaffold_9340 (45005-45186) | |
| 415-584, gnl|mm7|chr4 (6668432-6668613) | |
| 415-584, gnl|Mm7|chr4 (6668612-6668443) | |
| 415-584, gnl|monDom2|scaffold_4 (104606903-104606722) | |
| 415-584, gnl|oryCun1|scaffold_134176 (5619-5438) | |
| 415-584, gnl|panTro1|chr7_random (29975682-29975863) | |
| 415-584, gnl|rheMac2|chr8 (61470837-61471018) | |
| 415-584, gnl|rn3|chr5 (20355336-20355517) | |
| 415-584, gnl|tetNig1|chr5 (509967-510127) | |
| 415-584, gnl|xenTro1|scaffold_8 (3512189-3512370) | |
| 600-833, gnl|bosTau2|chr14 (12838368-12838600) | |
| 600-833, gnl|canFam2|chr29 (12580337-12580609) | |
| 600-833, gnl|danRer3|chr2 (10517949-10518194) | |
| 600-833, gnl|dasNov1|scaffold_2360 (80365-80634) | |
| 600-833, gnl|echTel1|scaffold_7667 (3937-4190) | |
| 600-833, gnl|fr1|chrUn (10324322-10324596) | |
| 600-833, gnl|galGal2|chr2 (111505136-111505407) | |
| 600-833, gnl|hg17|chr8 (59913189-59913459) | |
| 600-833, gnl|Hg17|chr8 (59913416-59913187) | |
| 600-833, gnl|loxAfr1|scaffold_9340 (27786-28059) | |
| 600-833, gnl|mm7|chr4 (6649280-6649549) | |
| 600-833, gnl|Mm7|chr4 (6649507-6649277) | |
| 600-833, gnl|monDom2|scaffold_4 (104622038-104621769) | |
| 600-833, gnl|oryCun1|scaffold_191172 (8001-7730) | |
| 600-833, gnl|panTro1|chr7 (61696449-61696719) | |
| 600-833, gnl|rheMac2|chr8 (61457160-61457430) | |
| 600-833, gnl|rn3|chr5 (20338832-20339102) | |
| 600-833, gnl|tetNig1|chr9 (1862004-1862243) | |
| 600-833, gnl|xenTro1|scaffold_8 (3504213-3504472) | |
| 605-824, gnl|bosTau2|chr10 (16044406-16044625) | |
| 605-824, gnl|Hg17|chr14 (21027185-21027404) | |
| 605-824, gnl|Mm7|chr14 (47620994-47621213) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 324-595, gnl|bosTau2|chr18 (22100202-22100473) | |
| 324-595, gnl|canFam2|chr2 (65956711-65956457) | |
| 324-595, gnl|danRer3|chr7 (30907451-30907197) | |
| 324-595, gnl|dasNov1|scaffold_2409 (41843-42113) | |
| 324-595, gnl|echTel1|scaffold_280871 (72826-73096) | |
| 324-595, gnl|fr1|chrUn (10324810-10325059) | |
| 324-595, gnl|galGal2|chr11 (5291594-5291338) | |
| 324-595, gnl|hg17|chr16 (51041682-51041937) | |
| 324-595, gnl|Hg17|chr16 (51041960-51041689) | |
| 324-595, gnl|loxAfr1|scaffold_4054 (75808-76032) | |
| 324-595, gnl|mm7|chr8 (88850436-88850691) | |
| 324-595, gnl|Mm7|chr8 (88850714-88850443) | |
| 324-595, gnl|monDom2|scaffold_35 (18021431-18021703) | |
| 324-595, gnl|oryCun1|scaffold_198218 (133025-132770) | |
| 324-595, gnl|panTro1|chr18 (45089503-45089758) | |
| 324-595, gnl|rheMac2|chr20 (50649081-50649336) | |
| 324-595, gnl|rn3|chr19 (17969089-17968834) | |
| 324-595, gnl|tetNig1|chr5 (509939-510188) | |
| 324-595, gnl|xenTro1|scaffold_296 (1348621-1348874) | |
| 415-584, gnl|bosTau2|chr14 (12823249-12823418) | |
| 415-584, gnl|canFam2|chr29 (12593671-12593852) | |
| 415-584, gnl|danRer3|chr2 (10519974-10520142) | |
| 415-584, gnl|dasNov1|scaffold_2360 (99459-99640) | |
| 415-584, gnl|echTel1|scaffold_243354 (8573-8392) | |
| 415-584, gnl|fr1|chrUn (10324817-10324998) | |
| 415-584, gnl|galGal2|chr2 (111510331-111510512) | |
| 415-584, gnl|hg17|chr8 (59926636-59926817) | |
| 415-584, gnl|Hg17|chr8 (59926816-59926647) | |
| 415-584, gnl|loxAfr1|scaffold_9340 (45005-45186) | |
| 415-584, gnl|mm7|chr4 (6668432-6668613) | |
| 415-584, gnl|Mm7|chr4 (6668612-6668443) | |
| 415-584, gnl|monDom2|scaffold_4 (104606903-104606722) | |
| 415-584, gnl|oryCun1|scaffold_134176 (5619-5438) | |
| 415-584, gnl|panTro1|chr7_random (29975682-29975863) | |
| 415-584, gnl|rheMac2|chr8 (61470837-61471018) | |
| 415-584, gnl|rn3|chr5 (20355336-20355517) | |
| 415-584, gnl|tetNig1|chr5 (509967-510127) | |
| 415-584, gnl|xenTro1|scaffold_8 (3512189-3512370) | |
| 600-833, gnl|bosTau2|chr14 (12838368-12838600) | |
| 600-833, gnl|canFam2|chr29 (12580337-12580609) | |
| 600-833, gnl|danRer3|chr2 (10517949-10518194) | |
| 600-833, gnl|dasNov1|scaffold_2360 (80365-80634) | |
| 600-833, gnl|echTel1|scaffold_7667 (3937-4190) | |
| 600-833, gnl|fr1|chrUn (10324322-10324596) | |
| 600-833, gnl|galGal2|chr2 (111505136-111505407) | |
| 600-833, gnl|hg17|chr8 (59913189-59913459) | |
| 600-833, gnl|Hg17|chr8 (59913416-59913187) | |
| 600-833, gnl|loxAfr1|scaffold_9340 (27786-28059) | |
| 600-833, gnl|mm7|chr4 (6649280-6649549) | |
| 600-833, gnl|Mm7|chr4 (6649507-6649277) | |
| 600-833, gnl|monDom2|scaffold_4 (104622038-104621769) | |
| 600-833, gnl|oryCun1|scaffold_191172 (8001-7730) | |
| 600-833, gnl|panTro1|chr7 (61696449-61696719) | |
| 600-833, gnl|rheMac2|chr8 (61457160-61457430) | |
| 600-833, gnl|rn3|chr5 (20338832-20339102) | |
| 600-833, gnl|tetNig1|chr9 (1862004-1862243) | |
| 600-833, gnl|xenTro1|scaffold_8 (3504213-3504472) | |
| 605-824, gnl|bosTau2|chr10 (16044406-16044625) | |
| 605-824, gnl|Hg17|chr14 (21027185-21027404) | |
| 605-824, gnl|Mm7|chr14 (47620994-47621213) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |